Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003700 (fabG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003700 showshow history
Names
fabG JW1079 ECK1079 b1093
Product
3-oxoacyl-[acyl-carrier-protein] reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1150670 1151404 735 245
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000452
EnteroFam0003700: Trusted threshold=654.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002347 (IPR002347 Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR011284 (IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF13561 (PF13561 Enoyl-(Acyl carrier protein) reductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011284
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 14996818
Reference: Escherichia coli K-12 		Dec 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity GO Inferred from Mutant Phenotype - PubMed ID: 14996818
Reference: Escherichia coli K-12 		Dec 2006
Person Approved GO molecular function GO:0050661 NADP binding GO Inferred from Direct Assay - PubMed ID: 11669613
Reference: Escherichia coli K-12 		Dec 2006
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fabG Published Sequence Analysis - PubMed ID: 1556094
Reference: Escherichia coli K-12 		Dec 2006
Person Approved synonym JW1079 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1079 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1093 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-oxoacyl-[acyl-carrier-protein] reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name beta-ketoacyl-acyl carrier protein (ACP) reductase Experimental - PubMed ID: 14996818
Reference: Escherichia coli K-12 		Dec 2006
Protein Family
Person Approved EnteroFam EnteroFam0003700: Trusted threshold=654.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000452
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase Protein Sequence Similarity - InterPro Domain: IPR011284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002347 Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13561 Enoyl-(Acyl carrier protein) reductase Protein Sequence Similarity - PFAM Model Name: PF13561
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.100 Published Annotation - Swiss-Prot Accession Number: P0AEK2 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment fabG is also a synonym for the biotin carboxylase gene accC (ASAP:ABE-0010677) Published Sequence Analysis - PubMed ID: 1682920
Reference: Escherichia coli K-12 W3110 		Dec 2006
Automated Process Approved db xref EcoGene:EG11318 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEK2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003700 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787335 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945645 Published Annotation - Entrez Gene Database ID: 945645
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEK2 Published Annotation - Swiss-Prot Accession Number: P0AEK2 Jan 2006
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74177.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved structure PDB:1I01 wt, whole protein, selenomethionine-labeled:2.6A; X-ray diffraction Experimental - PubMed ID: 11669613
Reference: Escherichia coli K-12 		Dec 2006
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011284
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 14996818
Reference: Escherichia coli K-12 		Dec 2006
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO molecular function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity GO Inferred from Mutant Phenotype - PubMed ID: 14996818
Reference: Escherichia coli K-12 		Dec 2006
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011284
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0050661 NADP binding GO Inferred from Direct Assay - PubMed ID: 11669613
Reference: Escherichia coli K-12 		Dec 2006
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000452 fabG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000569 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001392 fabG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000887 fabG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000572 fabG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000570 fabG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000918 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002545 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129621 fabG CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105047 fabG CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104462 fabG CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001639 fabG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002517 fabG CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001922 fabG_5 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002406 fabG_4 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006324 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047181 fabG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002505 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002196 fabG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300686 fabG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001631 fabG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002086 fabG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003719 fabG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001095 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005381 fabG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001009 fabG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003284 fabG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008329 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081736 fabG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001187 fabG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001420 fabG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001259 fabG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005657 fabG CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010188 fabG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009219 fabG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010136 fabG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006312 fabG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010098 fabG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011294 fabG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0011096 fabG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010851 fabG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025532 fabG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0010262 fabG_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005893 fabG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001641 fabG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001045 fabG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001105 fabG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001655 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001394 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001346 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001303 fabG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175383 fabG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001184 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002033 fabG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131418 fabG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000388 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001221 fabG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002217 fabG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003241 fabG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001095 fabG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004070 fabG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006243 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000817 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004272 fabG CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000852 fabG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003331 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001541 fabG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002720 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009239 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003232 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286995 fabG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004660 fabg1 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062057 fabG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001044 fabG CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000456 fabG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001405 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007494 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143345 fabG CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003896 fabG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006165 fabG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001886 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001351 fabG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006443 fabG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006044 fabG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005833 fabG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008624 fabG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005673 fabG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008844 fabG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008096 fabG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004765 fabG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005663 fabG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008421 fabG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001668 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001656 fabG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002340 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005843 fabG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008682 fabG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005353 fabG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107581 fabG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083439 fabG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001370 fabG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094135 fabG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008254 fabG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008460 fabG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006293 fabG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003933 fabG CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266381 fabG-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0002186 fabG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007642 fabG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002370 fabG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072230 fabG CDS
Person Approved Go view Shigella flexneri 301 ABT-0087441 fabG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001184 fabG CDS
Person Approved Go view Shigella sonnei 046 ADD-0001199 fabG CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001104 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002096 VC2021 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135575 fabG CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000170 fabG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004897 fabG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001653 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004945 fabG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001424 fabG_7 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000046 fabG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000025 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239676 fabG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007620 fabG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002331 fabG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005072 fabG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001879 fabG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120620 fabG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004730 fabG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005756 fabG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004217 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007868 fabG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008465 fabG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031450 fabG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007695 fabG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002449 fabG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002219 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007940 fabG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005545 fabG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002558 fabG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003055 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001980 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011793 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004287 fabG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1145670 to 1156404
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003675rluCCDSforward11449401145899Upstream
ABE-0285428repeat_regionforward11459281146002Upstream
ABE-0003678yceFCDScomplement11460111146595Upstream
ABE-0047242sraBncRNAforward11465891146757Upstream
ABE-0003684yceDCDSforward11467941147315Upstream
ABE-0003686rpmFCDSforward11473671147540Upstream
ABE-0003692plsXCDSforward11476211148691Upstream
ABE-0003696fabHCDSforward11487591149712Upstream
ABE-0003698fabDCDSforward11497281150657Upstream
ABE-0003700fabGCDSforward11506701151404Matches
ABE-0003703acpPCDSforward11516151151851Downstream
ABE-0003705fabFCDSforward11519391153180Downstream
ABE-0003709pabCCDSforward11533001154109Downstream
ABE-0003712mltGCDSforward11541121155134Downstream
ABE-0003714tmkCDSforward11551241155765Downstream
ABE-0003716holBCDSforward11557621156766Downstream
ABE-0285714matS2protein_bindforward11562991156311Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.