Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003703 (acpP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003703 showshow history
Names
acpP JW1080 ECK1080 b1094
Product
acyl carrier protein (ACP)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1151615 1151851 237 79
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000453
EnteroFam0003703: Trusted threshold=207.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009081 (IPR009081 Phosphopantetheine binding ACP domain) Apr 2008
Automated Process Approved IPR003231 (IPR003231 Acyl carrier protein (ACP)) Apr 2008
Automated Process Approved IPR006162 (IPR006162 Phosphopantetheine attachment site) Apr 2008
Automated Process Approved IPR006163 (IPR006163 (DEPRECATED) Phosphopantetheine-binding) Apr 2008
Automated Process Approved IPR036736 (IPR036736 ACP-like superfamily) Jul 2018
Automated Process Approved PF00550 (PF00550 Phosphopantetheine attachment site) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042967 (OBSOLETE) acyl-carrier-protein biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006163
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0031177 phosphopantetheine binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000036 acyl carrier activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name acpP Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1080 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1080 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1094 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acyl carrier protein (ACP) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name acyl carrier protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003703: Trusted threshold=207.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000453
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR009081 Phosphopantetheine binding ACP domain Protein Sequence Similarity - InterPro Domain: IPR009081
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006162 Phosphopantetheine attachment site Protein Sequence Similarity - InterPro Domain: IPR006162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006163 (DEPRECATED) Phosphopantetheine-binding Protein Sequence Similarity - InterPro Domain: IPR006163
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003231 Acyl carrier protein (ACP) Protein Sequence Similarity - InterPro Domain: IPR003231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036736 ACP-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00550 Phosphopantetheine attachment site Protein Sequence Similarity - PFAM Model Name: PF00550
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.6.15.4 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; acyl carrier protein) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG50003 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944805 Published Annotation - Entrez Gene Database ID: 944805
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A6A8 Published Annotation - Swiss-Prot Accession Number: P0A6A8 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6A8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787336 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003703 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function carrier; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved molecular interaction Interacts with the product of ybgC ASAP:2508:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of yiiD ASAP:12692:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of lpxD ASAP:610:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of acpS ASAP:8433:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of spoT ASAP:11935:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of plsB ASAP:13232:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of secA ASAP:343:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of aidB ASAP:13701:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of fabG ASAP:3700:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of fabF ASAP:3705:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of glmU ASAP:12201:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note acyl carrier protein; GO_process: GO:0042967 - acyl-carrier-protein biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74178.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042967 (OBSOLETE) acyl-carrier-protein biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0031177 phosphopantetheine binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006162
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006163
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000036 acyl carrier activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000453 acpP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000568 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001843 acpP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001519 acpP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000781 acpP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001069 acpP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000917 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002544 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129622 acpP CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105048 acpP CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104463 acpP CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001640 acpP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002516 acpP CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001923 acpP_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002407 acpP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006325 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047179 acpP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002504 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002197 acpP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300689 acpP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001632 acpP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002085 acpP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003720 acpP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001096 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005380 acpP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005269 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003283 acpP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008328 acpP CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077467 acpP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001188 acpP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001421 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001260 acpP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005658 acpP CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010189 acpP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009220 acpP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010137 acpP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006313 acpP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010099 acpP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011295 acpP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010852 acpP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025533 acpP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009988 acpP_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005894 acpP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001640 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001046 acpP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001106 acpP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001654 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001395 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001347 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001305 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175384 acpP CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001185 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002032 acpP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131419 acpP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000387 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001223 acpP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002216 acpP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003240 acpP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001096 acpP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004071 acpP CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006245 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000818 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004271 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003330 CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002719 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009240 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003233 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286996 acpP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004661 acpP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062058 acpP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001045 acpP CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000457 acpP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007493 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143342 acpP CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003895 acpP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006164 acpP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001885 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001352 acpP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006442 acpP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006040 acpP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005829 acpP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008623 acpP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005674 acpP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008097 acpP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004766 acpP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005664 acpP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008422 acpP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001667 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001655 acpP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002339 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005844 acpP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008681 acpP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005354 acpP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107585 acpP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083438 acpP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001371 acpP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094138 acpP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008253 acpP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008461 acpP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006292 acpP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003932 acpP CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266380 acpP CDS
Person Approved Go view Shigella boydii 227 ADV-0002185 acpP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007641 acpP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002369 acpP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072231 acpP CDS
Person Approved Go view Shigella flexneri 301 ABT-0087442 acpP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001185 acpP CDS
Person Approved Go view Shigella sonnei 046 ADD-0001200 acpP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002095 VC2020 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000169 acpP CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004894 acpP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001654 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004948 acpP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001425 acpP_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000047 acpP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000026 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239675 acpP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007619 acpP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002330 acpP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005071 acpP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001880 acpP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120624 acpP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004731 acpP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005755 acpP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008464 acpP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031451 acpP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007694 acpP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002448 acpP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002218 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007941 acpP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005546 acpP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002557 acpP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003054 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001981 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011800 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004286 acpP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1146615 to 1156851
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0047242sraBncRNAforward11465891146757Upstream
ABE-0003684yceDCDSforward11467941147315Upstream
ABE-0003686rpmFCDSforward11473671147540Upstream
ABE-0003692plsXCDSforward11476211148691Upstream
ABE-0003696fabHCDSforward11487591149712Upstream
ABE-0003698fabDCDSforward11497281150657Upstream
ABE-0003700fabGCDSforward11506701151404Upstream
ABE-0003703acpPCDSforward11516151151851Matches
ABE-0003705fabFCDSforward11519391153180Downstream
ABE-0003709pabCCDSforward11533001154109Downstream
ABE-0003712mltGCDSforward11541121155134Downstream
ABE-0003714tmkCDSforward11551241155765Downstream
ABE-0003716holBCDSforward11557621156766Downstream
ABE-0285714matS2protein_bindforward11562991156311Downstream
ABE-0003719ycfHCDSforward11567771157574Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.