Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003705 (fabF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003705 showshow history
Names
fabF ECK1081 JW1081 vtr fabJ cvc b1095
Product
3-oxoacyl-[acyl-carrier-protein] synthase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1151939 1153180 1242 414
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014030 (IPR014030 Beta-ketoacyl synthase, N-terminal) Apr 2008
Automated Process Approved IPR000794 (IPR000794 Beta-ketoacyl synthase) Apr 2008
Automated Process Approved IPR014031 (IPR014031 Beta-ketoacyl synthase, C-terminal) Apr 2008
Automated Process Approved IPR017568 (IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2) Jul 2018
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2018
Automated Process Approved IPR020841 (IPR020841 Polyketide synthase, beta-ketoacyl synthase domain) Jul 2018
Automated Process Approved PF02801 (PF02801 Beta-ketoacyl synthase, C-terminal domain) Jul 2018
Automated Process Approved PF00109 (PF00109 Beta-ketoacyl synthase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fabF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym cvc Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym vtr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1081 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1081 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym fabJ Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1095 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-oxoacyl-[acyl-carrier-protein] synthase II Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 3-oxoacyl-[acyl-carrier-protein] synthase II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR014031 Beta-ketoacyl synthase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR014031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000794 Beta-ketoacyl synthase Protein Sequence Similarity - InterPro Domain: IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014030 Beta-ketoacyl synthase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR014030
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00109 Beta-ketoacyl synthase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 Protein Sequence Similarity - InterPro Domain: IPR017568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Protein Sequence Similarity - InterPro Domain: IPR020841
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02801 Beta-ketoacyl synthase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02801
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.3.1.- Published Annotation - Database Name: EC2GO: GO:0016747
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.3.1.41 Published Annotation - Swiss-Prot Accession Number: P0AAI5 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12606 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAI5 Published Annotation - Swiss-Prot Accession Number: P0AAI5 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAI5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003705 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946665 Published Annotation - Entrez Gene Database ID: 946665
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787337 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74179.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000567 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001751 fabF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001317 fabF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000326 fabF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000571 fabF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000916 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002543 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001641 fabF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002515 fabF CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001924 fabF_3 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002408 fabF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006326 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017981 fabF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002503 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002198 fabF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300693 fabF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001633 fabF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002084 fabF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003721 fabF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001097 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005379 fabF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001011 fabF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003282 fabF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008326 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077468 fabF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001189 fabF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001422 fabF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010918 fabF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001261 fabF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005659 fabF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003919 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010190 fabF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009221 fabF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010138 fabF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006314 fabF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010100 fabF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011296 fabF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010853 fabF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025534 fabF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009989 fabF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005895 fabF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001639 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001047 fabF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001107 fabF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001653 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001396 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001348 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001306 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001186 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002031 fabF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131420 fabF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000386 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001224 fabF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002215 fabF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003239 fabF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001097 fabF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004072 fabF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006246 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000819 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004270 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000854 fabF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003329 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001543 fabF CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002718 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009241 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003234 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286997 fabF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004662 fabF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062059 fabF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001051 fabF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000458 fabF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007491 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143339 fabF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003894 fabF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006163 fabF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001884 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001353 fabF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006441 fabF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006036 fabF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005825 fabF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008622 fabF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005675 fabF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008098 fabF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004767 fabF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005665 fabF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008423 fabF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001666 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001654 fabF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002338 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005845 fabF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008680 fabF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005355 fabF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107589 fabF CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083437 fabF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001372 fabF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094141 fabF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008252 fabF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008462 fabF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006291 fabF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003931 fabF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266379 fabF-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0002184 fabF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007640 fabF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006358 fabF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002368 fabF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072232 fabF CDS
Person Approved Go view Shigella flexneri 301 ABT-0087443 fabF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001186 fabF CDS
Person Approved Go view Shigella sonnei 046 ADD-0001201 fabF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002094 VC2019 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004891 fabF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001655 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004951 fabF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001426 fabF_5 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000048 fabF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000027 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239674 fabF4 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007618 fabF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002328 fabF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005070 fabF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001881 fabF CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120627 fabF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004732 fabF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005754 fabF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003056 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009605 fabF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008463 fabF CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031452 fabF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007693 fabF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002446 fabF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002216 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007942 fabF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005547 fabF CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002556 fabF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003052 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001982 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011802 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004285 fabF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20101mutantTn5 InsertionRequest the StrainABE-0003705fabFfabF::Tn5KAN-2 at position 908 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1146939 to 1158180
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003684yceDCDSforward11467941147315Upstream
ABE-0003686rpmFCDSforward11473671147540Upstream
ABE-0003692plsXCDSforward11476211148691Upstream
ABE-0003696fabHCDSforward11487591149712Upstream
ABE-0003698fabDCDSforward11497281150657Upstream
ABE-0003700fabGCDSforward11506701151404Upstream
ABE-0003703acpPCDSforward11516151151851Upstream
ABE-0003705fabFCDSforward11519391153180Matches
ABE-0003709pabCCDSforward11533001154109Downstream
ABE-0003712mltGCDSforward11541121155134Downstream
ABE-0003714tmkCDSforward11551241155765Downstream
ABE-0003716holBCDSforward11557621156766Downstream
ABE-0285714matS2protein_bindforward11562991156311Downstream
ABE-0003719ycfHCDSforward11567771157574Downstream
ABE-0003722ptsGCDSforward11578691159302Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.