Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003714 (tmk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003714 showshow history
Names
tmk ycfG JW1084 ECK1084 b1098
Product
thymidylate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1155124 1155765 642 214
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000456
EnteroFam0003714: Trusted threshold=524.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000062 (IPR000062 (DEPRECATED) Thymidylate kinase-like) Apr 2008
Automated Process Approved IPR018094 (IPR018094 Thymidylate kinase) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF02223 (PF02223 Thymidylate kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006235 dTTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006233 dTDP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004798 thymidylate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tmk Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1084 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ycfG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1084 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1098 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thymidylate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name thymidylate kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003714: Trusted threshold=524.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000456
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000062 (DEPRECATED) Thymidylate kinase-like Protein Sequence Similarity - InterPro Domain: IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02223 Thymidylate kinase Protein Sequence Similarity - PFAM Model Name: PF02223
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018094 Thymidylate kinase Protein Sequence Similarity - InterPro Domain: IPR018094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.4.9 Published Annotation - Swiss-Prot Accession Number: P0A720 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003714 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12302 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787340 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A720 Published Annotation - Swiss-Prot Accession Number: P0A720 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A720 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945663 Published Annotation - Entrez Gene Database ID: 945663
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; 2'-Deoxyribonucleotide metabolism Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74182.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006233 dTDP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006235 dTTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004798 thymidylate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000456 tmk CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000564 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001111 tmk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001181 tmk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000327 tmk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000605 tmk CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000913 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002540 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129623 tmk CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105049 tmk CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104464 tmk CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001644 tmk CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002512 tmk CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001927 tmk CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002411 tmk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006331 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017984 tmk CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002500 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002201 tmk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300706 tmk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001636 tmk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002081 tmk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003724 tmk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001100 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005376 tmk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001014 tmk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003279 tmk CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008322 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009628 tmk CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077473 tmk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001192 tmk CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001425 tmk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001264 tmk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005662 tmk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006391 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010193 tmk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009224 tmk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006317 tmk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010103 tmk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025537 tmk CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009994 tmk_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005898 tmk CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001636 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001050 tmk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001110 tmk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001650 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001399 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001351 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175389 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001189 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002028 tmk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131423 tmk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000382 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001228 tmk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002212 tmk CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003236 tmk CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001100 tmk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004076 tmk CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006251 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000822 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004267 tmk CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000857 tmk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003326 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001546 tmk CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002715 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009244 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003237 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287001 tmk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004665 tmk CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062062 tmk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004016 tmk CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002795 tmk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004542 tmk CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007487 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143333 tmk CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003891 tmk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006160 tmk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001875 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001359 tmk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006438 tmk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006027 tmk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005816 tmk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008619 tmk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005678 tmk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007905 tmk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008107 tmk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007431 tmk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004770 tmk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005668 tmk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008426 tmk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001663 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001651 tmk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002335 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005848 tmk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008677 tmk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005364 tmk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008270 tmk CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107596 tmk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083434 tmk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001375 tdk_1 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094148 tmk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008249 tmk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008465 tmk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006288 tmk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003928 tmk CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266210 tmk CDS
Person Approved Go view Shigella boydii 227 ADV-0002181 tmk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007637 tmk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006355 tmk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002365 tmk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072235 tmk CDS
Person Approved Go view Shigella flexneri 301 ABT-0087446 tmk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001189 tmk CDS
Person Approved Go view Shigella sonnei 046 ADD-0001204 tmk CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002091 VC2016 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000166 tmk CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004887 tmk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001658 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004963 tmk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001429 tmk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000051 tmk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000030 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239666 tmk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007614 tmk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002323 tmk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005066 tmk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001885 tmk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120637 tmk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004736 tmk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005750 tmk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003059 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009609 tmk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008459 tmk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031457 tmk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007689 tmk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002441 tmk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002211 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007946 tmk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005550 tmk CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002553 tmk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003048 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001987 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011815 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004282 tmk CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1150124 to 1160765
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003698fabDCDSforward11497281150657Upstream
ABE-0003700fabGCDSforward11506701151404Upstream
ABE-0003703acpPCDSforward11516151151851Upstream
ABE-0003705fabFCDSforward11519391153180Upstream
ABE-0003709pabCCDSforward11533001154109Upstream
ABE-0003712mltGCDSforward11541121155134Overlaps Upstream
ABE-0003714tmkCDSforward11551241155765Matches
ABE-0003716holBCDSforward11557621156766Overlaps Downstream
ABE-0285714matS2protein_bindforward11562991156311Downstream
ABE-0003719ycfHCDSforward11567771157574Downstream
ABE-0003722ptsGCDSforward11578691159302Downstream
ABE-0003724fhuECDScomplement11593621161551Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.