Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003724 (fhuE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003724 showshow history
Names
fhuE JW1088 ECK1088 b1102
Product
ferric-rhodotorulic acid outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1159362 1161551 2190 730
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012910 (IPR012910 TonB-dependent receptor, plug domain) Apr 2008
Automated Process Approved IPR000531 (IPR000531 TonB-dependent receptor-like, beta-barrel) Apr 2008
Automated Process Approved IPR010917 (IPR010917 TonB-dependent receptor, conserved site) Apr 2008
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR010105 (IPR010105 TonB-dependent siderophore receptor) Apr 2008
Automated Process Approved PF07715 (PF07715 TonB-dependent Receptor Plug Domain) Jul 2018
Automated Process Approved PF00593 (PF00593 TonB dependent receptor) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0038023 signaling receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010105
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fhuE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1088 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1088 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1102 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ferric-rhodotorulic acid outer membrane transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name outer membrane pore protein, receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name outer membrane receptor for ferric iron uptake Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR010917 TonB-dependent receptor, conserved site Protein Sequence Similarity - InterPro Domain: IPR010917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07715 TonB-dependent Receptor Plug Domain Protein Sequence Similarity - PFAM Model Name: PF07715
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00593 TonB dependent receptor Protein Sequence Similarity - PFAM Model Name: PF00593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010105 TonB-dependent siderophore receptor Protein Sequence Similarity - InterPro Domain: IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012910 TonB-dependent receptor, plug domain Protein Sequence Similarity - InterPro Domain: IPR012910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000531 TonB-dependent receptor-like, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 5.5.7 (cell processes; adaptation to stress; Fe aquisition) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.B.14 (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily); The Outer Membrane Receptor (OMR) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.53 (transport; substrate; Fe) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.19 (metabolism; central intermediary metabolism; incorporation of metal ions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10306 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945649 Published Annotation - Entrez Gene Database ID: 945649
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P16869 Published Annotation - Swiss-Prot Accession Number: P16869 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16869 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787344 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003724 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note outer membrane receptor for ferric iron uptake; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane; GO_process: GO:0006826 - iron ion transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74186.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0038023 signaling receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010105
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001815 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002262 fhuE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002211 fhuE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003562 fhuE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002235 fhuE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001648 fhuE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004329 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001931 fhuE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009054 fhuE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001104 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005372 fhuE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001018 fhuE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003275 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008317 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009624 fhuE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009013 FhuE CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077477 fhuE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001196 fhuE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001429 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010758 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010254 fhuE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001268 fhuE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005666 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006395 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010198 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009228 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009990 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009454 fhuE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006321 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009372 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010107 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009698 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010736 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010475 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010238 fhuE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010341 fhuE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025541 fhuE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005902 fhuE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001632 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001054 fhuE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001114 fhuE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001646 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001403 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001355 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0001313 pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175393 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001193 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002024 fhuE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131427 fhuE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000378 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001232 fhuE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001279 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004080 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004714 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004354 fhuE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004342 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002284 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008278 fhuE CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061171 fhuE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003153 fhuE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002553 fhuE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000540 fhuE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003750 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006155 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001870 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001363 fhuE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006434 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006009 fhuE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005799 fhuE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008615 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005682 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007909 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008111 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007435 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004774 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005672 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008430 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002330 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005852 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008673 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005368 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008274 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001380 fhuE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094159 fhuE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008244 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008469 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006283 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266643 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002177 fhuE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007633 fhuE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006351 fhuE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002361 fhuE CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072239 fhuE pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001193 fhuE CDS
Person Approved Go view Shigella sonnei 046 ADD-0001208 fhuE CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237670 ysuR CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007302 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001013 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005665 fhuE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001822 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120396 ysuR CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005671 fhuE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004373 fhuE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000890 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008961 fhuE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004912 fhuE CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032365 ysuR CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007765 fhuE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002935 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001720 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006579 fhuE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006423 fhuE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001621 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001970 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003008 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22793mutantTn5 InsertionRequest the StrainABE-0003724fhuEfhuE::Tn5(KAN-2) at position 1942 in Minus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1154362 to 1166551
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003712mltGCDSforward11541121155134Downstream
ABE-0003714tmkCDSforward11551241155765Downstream
ABE-0003716holBCDSforward11557621156766Downstream
ABE-0285714matS2protein_bindforward11562991156311Downstream
ABE-0003719ycfHCDSforward11567771157574Downstream
ABE-0003722ptsGCDSforward11578691159302Downstream
ABE-0003724fhuECDScomplement11593621161551Matches
ABE-0003729hinTCDSforward11618851162244Upstream
ABE-0003731ycfLCDSforward11622471162624Upstream
ABE-0003733lpoBCDSforward11626381163279Upstream
ABE-0003735thiKCDSforward11632601164084Upstream
ABE-0003737nagZCDSforward11640951165120Upstream
ABE-0003740ycfPCDSforward11651431165685Upstream
ABE-0285429repeat_regionforward11657391165813Upstream
ABE-0003746ndhCDSforward11660851167389Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.