Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003729 (hinT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003729 showshow history
Names
hinT ycfF JW1089 ECK1089 b1103
Product
purine nucleoside phosphoramidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1161885 1162244 360 120
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000459
EnteroFam0003729: Trusted threshold=320.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001310 (IPR001310 Histidine triad (HIT) protein) Apr 2008
Automated Process Approved IPR036265 (IPR036265 HIT-like superfamily) Jul 2018
Automated Process Approved PF01230 (PF01230 HIT domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006412 translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hinT Published Annotation - PubMed ID: 15703176
Reference: Escherichia coli K-12 BW25113 		Jan 2007
Person Approved synonym ECK1089 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ycfF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW1089 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1103 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product purine nucleoside phosphoramidase Experimental - PubMed ID: 15703176
Reference: Escherichia coli K-12 BW25113 		Jan 2007
Automated Process Approved alternate product name purine nucleoside phosphoramidase, dadA activator protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative protein kinase C inhibitor Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003729: Trusted threshold=320.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000459
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001310 Histidine triad (HIT) protein Protein Sequence Similarity - InterPro Domain: IPR001310
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01230 HIT domain Protein Sequence Similarity - PFAM Model Name: PF01230
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036265 HIT-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036265
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 2.3 (information transfer; protein related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12172 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ACE7 Published Annotation - Swiss-Prot Accession Number: P0ACE7 Jan 2006
Automated Process Approved db xref ASAP:ABE-0003729 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ACE7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787346 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948549 Published Annotation - Entrez Gene Database ID: 948549
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved molecular interaction Interacts with the product of dnaN ASAP:12098:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated mutant phenotype hinT null: no coordinate information; a hinT null mutant is unable to grow under high salt conditions, tested using NaCl, KCl, NaOAc, and MnCl2 Experimental - PubMed ID: 15703176
Reference: Escherichia coli K-12 BW25113 		Jan 2007
Automated Process Approved note GO_process: GO:0006412 - translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74187.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006412 translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000459 hinT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000560 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000197 hinT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000195 hinT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000504 hinT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000441 hinT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000909 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002536 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129627 ycfF CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105053 ycfF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104468 ycfF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001649 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002508 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001932 hinT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002480 hinT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006337 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017994 hinT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002494 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002206 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300722 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001640 ycfF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002077 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003729 hinT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009056 hinT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001105 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005370 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001019 ycfF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003274 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008316 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009622 hinT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009012 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077479 hinT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001198 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001430 ycfF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009580 hinT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010256 hinT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001269 hinT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005668 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006397 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010200 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009230 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009992 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009452 hinT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006323 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009370 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010109 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009700 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010738 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010473 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010236 hinT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010343 hinT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025542 hinT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008188 hinT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005904 hinT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001631 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001055 hinT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001115 hinT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001645 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001404 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001356 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001315 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175394 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001195 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002022 hinT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131428 hinT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000376 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001234 ycfF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002208 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002718 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001104 ycfF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004081 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006263 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000829 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004260 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000862 ycfF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003321 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001551 ycfF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002710 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009250 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003243 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287007 hinT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004671 ycfF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062068 hinT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001155 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000464 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002369 hinT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007481 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143328 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000604 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006154 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001869 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001364 hinT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006433 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006006 ycfF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005796 ycfF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008614 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005683 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007910 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008112 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007436 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004775 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005673 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008431 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001658 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001646 hinT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002329 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005853 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008672 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005369 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008275 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107610 hinT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083429 hinT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001381 ycfF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094163 hinT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008243 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008470 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006282 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003877 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266320 CDS
Person Approved Go view Shigella boydii 227 ADV-0002173 ycfF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007631 hinT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006350 hinT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002360 ycfF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072240 hinT CDS
Person Approved Go view Shigella flexneri 301 ABT-0255954 hinT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001194 ycfF CDS
Person Approved Go view Shigella sonnei 046 ADD-0001209 hinT CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001971 VC1897 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000163 hinT CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004884 ycfF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001667 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005072 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003337 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000056 hinT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000042 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239650 hinT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006929 hinT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002314 hinT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005060 hinT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001891 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120666 hinT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004742 hinT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005744 hinT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000622 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009615 hinT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008453 hinT CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031464 hinT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007683 hinT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002435 hinT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002205 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007952 hinT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005555 hinT CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002540 hinT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003030 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001992 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011834 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004278 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22037mutantTn5 InsertionRequest the StrainABE-0003729hinTycfF::Tn5KAN-I-SceI at position 159 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1156885 to 1167244
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003719ycfHCDSforward11567771157574Upstream
ABE-0003722ptsGCDSforward11578691159302Upstream
ABE-0003724fhuECDScomplement11593621161551Upstream
ABE-0003729hinTCDSforward11618851162244Matches
ABE-0003731ycfLCDSforward11622471162624Downstream
ABE-0003733lpoBCDSforward11626381163279Downstream
ABE-0003735thiKCDSforward11632601164084Downstream
ABE-0003737nagZCDSforward11640951165120Downstream
ABE-0003740ycfPCDSforward11651431165685Downstream
ABE-0285429repeat_regionforward11657391165813Downstream
ABE-0003746ndhCDSforward11660851167389Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.