Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003737 (nagZ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003737 showshow history
Names
nagZ JW1093 ECK1093 ycfO b1107
Product
beta-N-acetylglucosaminidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1164095 1165120 1026 342
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000462
EnteroFam0003737: Trusted threshold=889.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001764 (IPR001764 Glycoside hydrolase, family 3, N-terminal) Apr 2008
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF00933 (PF00933 Glycosyl hydrolase family 3 N terminal domain) Jul 2018
Automated Process Uncurated GH3 (GH3 Glycoside Hydrolase Family 3) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nagZ Published Annotation - PubMed ID: 9158731
Reference: Escherichia coli 		Jan 2007
Person Approved synonym ycfO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1093 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1093 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1107 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product beta-N-acetylglucosaminidase Experimental - PubMed ID: 10940025
Reference: Escherichia coli K-12 MC4100 		Jan 2007
Person Approved alternate product name beta-1,4-N-acetylglucosaminidase Experimental - PubMed ID: 10978324
Reference: Escherichia coli K-12 AB1157 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0003737: Trusted threshold=889.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000462
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001764 Glycoside hydrolase, family 3, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00933 Glycosyl hydrolase family 3 N terminal domain Protein Sequence Similarity - PFAM Model Name: PF00933
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH3 Glycoside Hydrolase Family 3 Protein Sequence Similarity - CAZy Model Name: GH3
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.2.1.- Published Annotation - Database Name: EC2GO: GO:0004553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.2.1.52 Published Annotation - Swiss-Prot Accession Number: P75949 Feb 2006
Person Uncurated MultiFun 1.7.34 (metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13433 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945671 Published Annotation - Entrez Gene Database ID: 945671
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75949 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75949 Published Annotation - Swiss-Prot Accession Number: P75949 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003737 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787350 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0000270 - peptidoglycan metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74191.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000462 nagZ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000556 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000990 nagZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000951 nagZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001078 nagZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000442 nagZ CDS
Ortholog
Automated Process Approved Go view Brenneria salicis ATCC 15712 [T] AMK-0000905 CDS
Automated Process Approved Go view Brenneria sp. EniD312 AKG-0002532 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001653 nagZ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002504 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001936 nagZ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002484 nagZ CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0006343 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017999 nagZ CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0002490 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002210 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0300734 nagZ CDS
Automated Process Approved Go view Erwinia amylovora ATCC BAA-2158 APN-0001644 nagZ CDS
Person Uncurated Go view Erwinia amylovora CFBP 1430 AKH-0001553 nagZ CDS
Person Uncurated Go view Erwinia billingiae 661 [T] AKT-0001728 nagZ CDS
Person Uncurated Go view Erwinia pyrifoliae DSM 12163 [T] AJZ-0002357 ycfO CDS
Person Uncurated Go view Erwinia pyrifoliae Ep1/96 AKA-0002198 nagZ CDS
Person Uncurated Go view Erwinia sp. Ejp617 AOU-0002671 ycfO CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002073 nagZ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003734 nagZ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009060 nagZ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001109 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005366 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001023 nagZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003270 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008310 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009618 nagZ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009008 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077483 nagZ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001202 nagZ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001434 nagZ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009584 nagZ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010260 nagZ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001273 nagZ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005672 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006401 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010204 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009234 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009996 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009448 nagZ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006327 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009366 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010113 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009704 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010742 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010469 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010232 nagZ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010347 nagZ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025546 nagZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008192 nagZ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005908 nagZ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001627 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001059 nagZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001119 nagZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001641 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001408 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001360 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001319 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001199 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002018 nagZ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131432 nagZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000372 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001238 ycfO CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002203 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002722 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001108 nagZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004085 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0006269 CDS
Automated Process Approved Go view Pantoea agglomerans IG1 APM-0000833 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0004256 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0000866 nagZ CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0003317 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0001555 nagZ CDS
Person Uncurated Go view Pantoea ananatis LMG 5342 APQ-0002779 yfcO CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002706 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009254 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0003247 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287011 nagZ CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0004675 ycfO CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062072 nagZ CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0001145 nagZ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002799 nagZ CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0002373 nagZ CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0007476 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143321 nagZ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003565 nagZ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006150 nagZ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001864 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001368 nagZ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006429 nagZ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005993 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005784 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008610 nagZ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005687 nagZ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007914 nagZ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008116 nagZ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007440 nagZ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004779 nagZ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005677 nagZ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008435 nagZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001654 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001642 nagZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002325 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005857 nagZ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008668 nagZ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005373 nagZ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008279 nagZ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107618 nagZ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083425 nagZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001385 nagZ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094175 nagZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008239 nagZ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008474 nagZ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006278 nagZ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003873 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265831 nagZ CDS
Person Approved Go view Shigella boydii 227 ADV-0002169 ycfO CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007627 nagZ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002356 ycfO CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072244 nagZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0087454 nagZ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001198 ycfO CDS
Person Approved Go view Shigella sonnei 046 ADD-0001213 nagZ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000751 VC0692 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004880 nagZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001671 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005080 ycfO CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003333 bglX1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000060 nagZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000046 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239645 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006933 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002308 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005055 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001895 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120675 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004747 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005740 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000625 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009619 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008448 nagZ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031468 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007679 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002429 nagZ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002199 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007956 nagZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005559 nagZ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002536 nagZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003024 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001998 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011848 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004274 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22039mutantTn5 InsertionRequest the StrainABE-0003737nagZycfO::Tn5KAN-I-SceI at position 502 in Plus orientation ,+ pKD460Blattner Laboratory
FB22311mutantTn5 InsertionRequest the StrainABE-0003737nagZycfO::Tn5KAN-I-SceI at position 502 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1159095 to 1170120
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003722ptsGCDSforward11578691159302Upstream
ABE-0003724fhuECDScomplement11593621161551Upstream
ABE-0003729hinTCDSforward11618851162244Upstream
ABE-0003731ycfLCDSforward11622471162624Upstream
ABE-0003733lpoBCDSforward11626381163279Upstream
ABE-0003735thiKCDSforward11632601164084Upstream
ABE-0003737nagZCDSforward11640951165120Matches
ABE-0003740ycfPCDSforward11651431165685Downstream
ABE-0285429repeat_regionforward11657391165813Downstream
ABE-0003746ndhCDSforward11660851167389Downstream
ABE-0285430repeat_regionforward11674021167431Downstream
ABE-0003752ycfJCDSforward11675991168138Downstream
ABE-0003754comRCDScomplement11682001168832Downstream
ABE-0003758bhsACDSforward11690731169330Downstream
ABE-0285841bhsBncRNAforward11693031169402Downstream
ABE-0003760ldtCCDScomplement11694121170374Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.