Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003794 (potB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003794 showshow history
Names
potB JW1111 ECK1111 b1125
Product
membrane component of an ABC superfamily polyamine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1183617 1184444 828 276
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name potB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1111 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1111 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1125 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily polyamine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name polyamine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name spermidine/putrescine transport system permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name spermidine/putrescine transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.14 (metabolism; central intermediary metabolism; polyamine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.166 (transport; substrate; putrescine/spermidine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFK4 Published Annotation - Swiss-Prot Accession Number: P0AFK4 Jan 2006
Automated Process Approved db xref GeneID:945692 Published Annotation - Entrez Gene Database ID: 945692
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787369 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFK4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003794 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10750 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note spermidine/putrescine transport system permease; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006596 - polyamine biosynthetic process; GO_process: GO:0009310 - amine catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74209.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002860 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002457 potB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002438 potB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003852 potB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002357 potB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001142 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002236 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001674 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002477 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001955 potB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002502 potB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002227 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003753 potB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006002 potB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001129 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009731 potB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001041 potB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003252 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008289 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009270 potB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008715 PotB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077584 potB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001220 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010216 potB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010243 potB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001348 potB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005730 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006482 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010282 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009316 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008972 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007817 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006406 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008681 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010194 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008408 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011014 potB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008100 potB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008201 potB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007878 potB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025625 potB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008212 potB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005923 potB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001608 potB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001076 potB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001137 potB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001623 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001427 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001378 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175421 potB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001218 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002000 potB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131519 potB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002491 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001256 potB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002730 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001135 potB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004103 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009269 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004692 potB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062714 potB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001445 potB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003912 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004311 potB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006707 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006133 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001842 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001385 potB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006410 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005934 potB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005729 potB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008591 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005706 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007933 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008135 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007458 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004797 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005695 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008454 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001637 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001625 potB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002302 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005874 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008826 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005392 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008298 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107651 potB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083409 potB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001404 potB CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094222 potB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008221 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008493 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006260 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003782 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002125 potB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006706 potB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006329 potB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002340 potB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072262 potB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087470 potB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001214 potB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001229 potB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001499 VC1427 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006615 potB CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011926 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004254 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1178617 to 1189444
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003778nagKCDSforward11785931179504Downstream
ABE-0003781cobBCDSforward11795201180359Downstream
ABE-0285431repeat_regionforward11803541180449Downstream
ABE-0003784ycfZCDScomplement11804791181267Downstream
ABE-0003786ymfACDScomplement11812641181725Downstream
ABE-0003789potDCDScomplement11817831182829Downstream
ABE-0003791potCCDScomplement11828261183620Overlaps Downstream
ABE-0003794potBCDScomplement11836171184444Matches
ABE-0003796potACDScomplement11844581185594Upstream
ABE-0003800pepTCDSforward11858441187070Upstream
ABE-0285432repeat_regionforward11870831187106Upstream
ABE-0003802roxACDScomplement11871191188240Upstream
ABE-0003805phoQCDScomplement11883161189776Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.