Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003810 (purB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003810 showshow history
Names
purB ade JW1117 ECK1117 b1131
Product
adenylosuccinate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1190616 1191986 1371 457
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000476
EnteroFam0003810: Trusted threshold=1360; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000362 (IPR000362 Fumarate lyase family) Apr 2008
Automated Process Approved IPR004769 (IPR004769 Adenylosuccinate lyase) Apr 2008
Automated Process Approved IPR008948 (IPR008948 L-Aspartase-like) Apr 2008
Automated Process Approved IPR013539 (IPR013539 Adenylosuccinate lyase PurB, C-terminal) Apr 2008
Automated Process Approved IPR022761 (IPR022761 Fumarate lyase, N-terminal) Jul 2018
Automated Process Approved PF00206 (PF00206 Lyase) Jul 2018
Automated Process Approved PF08328 (PF08328 Adenylosuccinate lyase C-terminal) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006188 IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013539
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009152 purine ribonucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000362
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1117 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1117 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ade Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1131 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product adenylosuccinate lyase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name adenylosuccinate lyase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003810: Trusted threshold=1360; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000476
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000362 Fumarate lyase family Protein Sequence Similarity - InterPro Domain: IPR000362
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008948 L-Aspartase-like Protein Sequence Similarity - InterPro Domain: IPR008948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013539 Adenylosuccinate lyase PurB, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013539
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR022761 Fumarate lyase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR022761
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08328 Adenylosuccinate lyase C-terminal Protein Sequence Similarity - PFAM Model Name: PF08328
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00206 Lyase Protein Sequence Similarity - PFAM Model Name: PF00206
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004769 Adenylosuccinate lyase Protein Sequence Similarity - InterPro Domain: IPR004769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.3.2.2 Published Annotation - Swiss-Prot Accession Number: P0AB89 Feb 2006
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AB89 Published Annotation - Swiss-Prot Accession Number: P0AB89 Jan 2006
Automated Process Approved db xref GeneID:945695 Published Annotation - Entrez Gene Database ID: 945695
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787376 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB89 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0003810 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11314 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74215.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009152 purine ribonucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006188 IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013539
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000362
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000476 purB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001170 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000188 purB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000146 purB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001325 purB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000705 purB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001147 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002230 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129533 purB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104970 purB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104373 purB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001680 purB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002468 purB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001963 purB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002516 purB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006699 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017763 purB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002152 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002234 purB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300868 purB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001688 purB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002033 purB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003759 purB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006010 purB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001136 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009738 purB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001047 purB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003246 purB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008282 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009277 purB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008708 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077618 purB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001227 purB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001598 purB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010540 purB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010235 purB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001354 purB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005736 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003974 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010308 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009342 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008998 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007842 purB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006432 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008654 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010220 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008414 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010411 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008131 purB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008175 purB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007906 purB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025655 purB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008218 purB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005929 purB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001602 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001081 purB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001143 purB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001616 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001434 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001385 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001345 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175427 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001224 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001993 purB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131552 purB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002461 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001263 purB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002184 purB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003166 purB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001143 purB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004109 purB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006823 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000849 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004239 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000881 purB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003300 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001571 purB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002690 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009275 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003261 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287028 purB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004698 purB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062708 purB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001441 purB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000641 purB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004305 purB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006715 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143287 purB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003412 purB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006126 purB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001836 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001392 purB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006403 purB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005905 purB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005701 purB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008584 purB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005713 purB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007940 purB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008142 purB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007465 purB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004804 purB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005702 purB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008461 purB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001630 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001618 purB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002294 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005881 purB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008819 purB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005399 purB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008305 purB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107670 purB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083402 purB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001412 purB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094239 purB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008214 purB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008500 purB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006252 purB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003765 purB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266232 purB CDS
Person Approved Go view Shigella boydii 227 ADV-0002116 purB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006712 purB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006323 purB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002334 purB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072285 purB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087492 purB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001238 purB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001235 purB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001194 VC1126 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000157 purB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004848 purB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000418 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005128 purB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003318 purB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000075 purB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000060 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238546 purB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006968 purB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002286 purB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005036 purB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001763 purB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120739 purB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004767 purB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005721 purB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002614 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007842 purB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007620 purB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031492 purB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007658 purB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002407 purB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002176 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007973 purB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005577 purB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002519 purB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003004 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002017 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011967 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004246 purB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1185616 to 1196986
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003800pepTCDSforward11858441187070Downstream
ABE-0285432repeat_regionforward11870831187106Downstream
ABE-0003802roxACDScomplement11871191188240Downstream
ABE-0003805phoQCDScomplement11883161189776Downstream
ABE-0003807phoPCDScomplement11897761190447Downstream
ABE-0285433repeat_regionforward11905801190602Downstream
ABE-0003810purBCDScomplement11906161191986Matches
ABE-0003812hflDCDScomplement11919901192631Upstream
ABE-0003815mnmACDScomplement11926671193773Upstream
ABE-0003818nudJCDScomplement11938271194288Upstream
ABE-0003820rluECDScomplement11942981194951Upstream
ABE-0003823icdCDSforward11951231196373Upstream
ABE-0234207e14prophageforward11962201211423Upstream
ABE-0285434misc_featureforward11962201211412Upstream
ABE-0285833C0293ncRNAforward11967111196782Upstream
ABE-0003825ymfDCDScomplement11968671197532Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.