Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003823 (icd) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003823 showshow history
Names
icd icdE icdA JW1122 ECK1122 b1136
Product
e14 prophage; isocitrate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1195123 1196373 1251 417
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000481
EnteroFam0003823: Trusted threshold=1247.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004439 (IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic) Apr 2008
Automated Process Approved IPR001804 (IPR001804 (DEPRECATED) Isocitrate and isopropylmalate dehydrogenases family) Apr 2008
Automated Process Approved IPR024084 (IPR024084 Isopropylmalate dehydrogenase-like domain) Jul 2018
Automated Process Approved PF00180 (PF00180 Isocitrate/isopropylmalate dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR024084, IPR004439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0004450 isocitrate dehydrogenase (NADP+) activity GO Inferred from Mutant Phenotype - PubMed ID: 112096
Reference: Escherichia coli K-12 		Jan 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name icd Published Sequence Analysis - PubMed ID: 3112144
Reference: Escherichia coli K-12 		Jan 2008
Person Approved synonym ECK1122 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym icdE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym icdA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW1122 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1136 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product e14 prophage; isocitrate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name isocitrate dehydrogenase (NADP+) Experimental - PubMed ID: 112096
Reference: Escherichia coli K-12 		Jan 2008
Person Approved alternate product name isocitrate dehydrogenase, specific for NADP+ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003823: Trusted threshold=1247.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000481
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00180 Isocitrate/isopropylmalate dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00180
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic Protein Sequence Similarity - InterPro Domain: IPR004439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR024084 Isopropylmalate dehydrogenase-like domain Protein Sequence Similarity - InterPro Domain: IPR024084
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001804 (DEPRECATED) Isocitrate and isopropylmalate dehydrogenases family Protein Sequence Similarity - InterPro Domain: IPR001804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.1.1.- Published Annotation - Database Name: EC2GO: GO:0016616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.1.42 Published Annotation - Swiss-Prot Accession Number: P08200 Feb 2006
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10489 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08200 Published Annotation - Swiss-Prot Accession Number: P08200 Jan 2005
Automated Process Approved db xref GeneID:945702 Published Annotation - Entrez Gene Database ID: 945702
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0003823 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08200 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787381 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Energy metabolism, carbon: TCA cycle; Phage or Prophage Related Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note isocitrate dehydrogenase, specific for NADP+; GO_process: GO:0006099 - tricarboxylic acid cycle; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74220.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR024084, IPR004439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO molecular function GO:0004450 isocitrate dehydrogenase (NADP+) activity GO Inferred from Mutant Phenotype - PubMed ID: 112096
Reference: Escherichia coli K-12 		Jan 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000481 icd CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001165 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001323 icd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000544 icd CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001323 icd CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001329 icd CDS
Paralog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0285040 icdC pseudogene
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001152 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002225 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001686 icd CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002463 icd CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001968 icd CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002522 icd_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006704 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017756 icd CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002146 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002239 icd CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300882 icdA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001693 icdA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002013 icd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003764 icd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006016 icd CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001141 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009745 icd CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001052 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0003241 icd CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008277 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009282 icd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008703 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077625 icd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010535 icd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010229 icd CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001359 icd CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005741 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003979 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010313 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009347 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009003 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007847 icd CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006438 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008648 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010226 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008419 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010416 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008136 icd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008169 icd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007912 icd CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025660 icd CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008223 icd_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005934 icd CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004421 icd CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001148 icd CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001229 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001988 icd CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131557 icd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002456 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001269 icdA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002179 icd CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003144 icd CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001148 icdA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004114 icd CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006818 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000854 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004234 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000886 icd CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003295 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001576 icd CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002685 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009280 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003266 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287034 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004703 icdA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062703 icd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001308 icd CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001824 icd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004299 icd CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006720 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143277 icd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006120 icd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001828 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001398 icd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006397 icd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005889 icdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005685 icdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008578 icd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005719 icd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007946 icd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008148 icd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007471 icd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004810 icd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005708 icd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008467 icd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001624 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001612 icd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002288 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005887 icd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008813 icd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005405 icd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008311 icd CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107682 icd CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083396 icd CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001418 icdA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094262 icd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008208 icd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008506 icd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006246 icd CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003758 icd CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002111 icdA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006718 icd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006318 icd CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002329 icdA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072290 icd CDS
Person Approved Go view Shigella flexneri 301 ABT-0087497 icd CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001243 icdA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001240 icd CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004838 icd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000413 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005141 icd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003313 icdA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000080 icd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000066 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238552 icd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006963 icd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002281 icd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005031 icd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001758 icdA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120751 icd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004772 icd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005716 icd CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007837 icd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007615 icd CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031497 icd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007653 icd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002402 icd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002171 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007978 icd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005582 icd CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002514 icd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002999 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002022 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0011984 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004241 icd CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1190123 to 1201373
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003807phoPCDScomplement11897761190447Upstream
ABE-0285433repeat_regionforward11905801190602Upstream
ABE-0003810purBCDScomplement11906161191986Upstream
ABE-0003812hflDCDScomplement11919901192631Upstream
ABE-0003815mnmACDScomplement11926671193773Upstream
ABE-0003818nudJCDScomplement11938271194288Upstream
ABE-0003820rluECDScomplement11942981194951Upstream
ABE-0003823icdCDSforward11951231196373Matches
ABE-0234207e14prophageforward11962201211423Overlaps Downstream
ABE-0285434misc_featureforward11962201211412Overlaps Downstream
ABE-0285833C0293ncRNAforward11967111196782Downstream
ABE-0003825ymfDCDScomplement11968671197532Downstream
ABE-0003827ymfECDScomplement11975331198237Downstream
ABE-0003834litCDSforward11986951199588Downstream
ABE-0003836intECDScomplement11996791200806Downstream
ABE-0003838xisECDScomplement12007871201032Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.