Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003995 (dadA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003995 showshow history
Names
dadA JW1178 ECK1177 dadR b1189
Product
D-amino acid dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1237571 1238869 1299 433
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000490
EnteroFam0003995: Trusted threshold=1097.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001327 (IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain) Apr 2008
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Apr 2008
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01266 (PF01266 FAD dependent oxidoreductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dadA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1178 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1177 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym dadR Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1189 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-amino acid dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name D-amino acid dehydrogenase subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0003995: Trusted threshold=1097.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000490
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01266 FAD dependent oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF01266
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 1.4.5.1 Published Annotation - EcoCyc Accession Number: EG11407
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated EC number 1.4.99.- Published Annotation - Swiss-Prot Accession Number: P0A6J5
Reference: Escherichia coli K-12 		Dec 2018
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6J5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6J5 Published Annotation - Swiss-Prot Accession Number: P0A6J5 Jan 2006
Automated Process Approved db xref GeneID:945752 Published Annotation - Entrez Gene Database ID: 945752
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0003995 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787438 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Amino acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note D-amino acid dehydrogenase subunit; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74273.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000490 dadA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001110 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001050 dadA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001061 dadA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001999 dadA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001103 dadA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001225 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002099 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002445 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001563 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002559 thiO CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003222 thiO CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006770 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018981 dadA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002079 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003168 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302198 dadA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002165 dadA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001603 dadA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003797 dadA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006050 dadA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001242 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009781 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001134 dadA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003160 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008242 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005084 dadA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008951 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077749 dadA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001323 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001636 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009886 dadA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001391 dadA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005776 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004055 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010388 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009423 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009080 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008844 dadA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006516 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010369 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010306 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008499 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010494 dadA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007990 dadA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025739 dadA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005839 dadA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005969 dadA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001504 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001115 dadA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001205 dadA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001575 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001478 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001426 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001446 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001264 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001959 dadA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131635 dadA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002429 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001379 dadA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001782 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002673 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002315 dadA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000411 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006729 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001497 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0001438 CDS
Person Uncurated Go view Pantoea ananatis AJ13355 AOV-0001470 dadA CDS
Person Uncurated Go view Pantoea ananatis B1-9 APL-0002607 CDS
Person Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002187 dadA CDS
Person Uncurated Go view Pantoea ananatis PA13 APK-0002025 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009962 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0001679 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0286882 CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0005325 dadA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062616 dadA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001294 dadA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001796 dadA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002339 dadA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006819 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142716 dadA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000102 dadA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005506 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001183 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002106 dadA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005787 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004023 dadA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004649 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006363 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005303 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005357 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008127 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005441 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006306 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004477 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001072 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001070 dadA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001426 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006555 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009131 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006029 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007104 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108886 dadA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082788 dadA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002181 dadA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095864 dadA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007524 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006870 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007417 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003034 CDS
Person Approved Go view Shigella boydii 227 ADV-0002089 dadA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006750 dadA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007824 dadA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001398 dadA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072319 dadA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087518 dadA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001271 dadA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001272 dadA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000850 VC0786 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004487 dadA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003124 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006698 dadA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002680 dadA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002485 dadA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001689 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238954 dadA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006474 dadA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001821 dadA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004637 dadA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001301 dadA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122322 dadA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005572 dadA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008025 dadA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002398 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008725 dadA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007868 dadA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031885 dadA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005835 dadA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001946 dadA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001177 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007626 dadA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005968 dadA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002156 dadA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002539 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002491 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012412 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004128 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22797mutantTn5 InsertionRequest the StrainABE-0003995dadAdadA::Tn5(KAN-2) at position 998 in Plus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1232571 to 1243869
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003979dsbBCDScomplement12325001233030Upstream
ABE-0003984nhaBCDScomplement12331761234717Upstream
ABE-0003988fadRCDSforward12349381235657Upstream
ABE-0003990ycgBCDScomplement12357091237241Upstream
ABE-0003995dadACDSforward12375711238869Matches
ABE-0003997dadXCDSforward12388791239949Downstream
ABE-0285760mobile_elementforward12401881240289Downstream
ABE-0285759ymgMCDSforward12402601240463Downstream
ABE-0003999cvrACDScomplement12403351242071Downstream
ABE-0004002ldcACDScomplement12421661243080Downstream
ABE-0004006emtACDSforward12431801243791Downstream
ABE-0004009ycgRCDScomplement12437931244527Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.