Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0003997 (dadX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0003997 showshow history
Names
dadX alnB msuA? dadB JW1179 ECK1178 msuA b1190
Product
alanine racemase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1238879 1239949 1071 357
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000821 (IPR000821 Alanine racemase) Apr 2008
Automated Process Approved IPR011079 (IPR011079 Alanine racemase, C-terminal) Apr 2008
Automated Process Approved IPR001608 (IPR001608 Alanine racemase, N-terminal) Apr 2008
Automated Process Approved IPR012155 (IPR012155 (DEPRECATED) Alanine racemase) Apr 2008
Automated Process Approved IPR009006 (IPR009006 Alanine racemase/group IV decarboxylase, C-terminal) Apr 2008
Automated Process Approved IPR029066 (IPR029066 PLP-binding barrel) Jul 2018
Automated Process Approved PF01168 (PF01168 Alanine racemase, N-terminal domain) Jul 2018
Automated Process Approved PF00842 (PF00842 Alanine racemase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009006
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dadX Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym msuA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1178 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym alnB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym msuA? Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1179 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym dadB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1190 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product alanine racemase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name alanine racemase 2, PLP-binding, catabolic Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name alanine racemase 2, catabolic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011079 Alanine racemase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011079
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000821 Alanine racemase Protein Sequence Similarity - InterPro Domain: IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012155 (DEPRECATED) Alanine racemase Protein Sequence Similarity - InterPro Domain: IPR012155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001608 Alanine racemase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001608
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009006
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029066 PLP-binding barrel Protein Sequence Similarity - InterPro Domain: IPR029066
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01168 Alanine racemase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF01168
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00842 Alanine racemase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00842
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.1.1.1 Published Annotation - Swiss-Prot Accession Number: P29012 Feb 2006
Person Uncurated MultiFun 1.5.1.17 (metabolism; building block biosynthesis; amino acids; alanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11408 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P29012 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945754 Published Annotation - Entrez Gene Database ID: 945754
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P29012 Published Annotation - Swiss-Prot Accession Number: P29012 Jan 2005
Automated Process Approved db xref ASAP:ABE-0003997 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787439 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Amino acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note alanine racemase 2, catabolic; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0006523 - alanine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74274.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009006
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006702 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002376 dadX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002283 dadX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002306 dadX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002162 dadX CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002444 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001564 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002558 dadX CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003221 dadX_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003167 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302194 dadX CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002164 dadX CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001604 dadB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003798 alr1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006051 alr1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001243 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009782 dadX CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001135 dadX CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003159 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008241 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005085 alr1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008950 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077750 dadX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001324 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001637 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009885 alr1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010569 alr1 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001392 dadX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005777 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004056 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010389 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009424 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009081 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008845 alr1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006517 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010368 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010307 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008500 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010495 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009933 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009783 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007991 alr1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025740 dadX CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005840 dadX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005970 alr1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001503 dadX CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001116 dadX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001206 dadX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001574 alr CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001479 alr CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001427 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001447 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001265 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001958 alr1 CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131636 pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002430 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001380 dadX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001781 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002314 alr CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000410 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001496 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001439 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001469 dadB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002608 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002186 dadB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002026 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009961 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001680 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286881 dadX CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005324 dadX CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142715 dadX CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000104 dadX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005507 alr CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001184 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002105 dadX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005788 alr CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004026 dadX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004650 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006362 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005302 alr CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005356 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008126 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005440 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006305 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004478 alr CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001073 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001071 dadX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001427 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006554 alr CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009132 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006028 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007103 alr CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108883 dadX CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082789 dadX CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002180 dadX CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095861 dadX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007525 alr CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006869 alr CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007416 alr CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003035 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007825 alr1 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072320 dadX CDS
Person Approved Go view Shigella flexneri 301 ABT-0087519 dadX CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001272 dadX CDS
Person Approved Go view Shigella sonnei 046 ADD-0001273 dadX CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000551 dadX CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004485 dadX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003125 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006695 dadB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002681 dadX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002484 dadX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001690 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012415 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004127 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20266mutantTn5 InsertionRequest the StrainABE-0003997dadXdadX::Tn5KAN-2 at position 307 in Plus orientation ,- pKD46 Insertion site is approximate0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1233879 to 1244949
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003984nhaBCDScomplement12331761234717Upstream
ABE-0003988fadRCDSforward12349381235657Upstream
ABE-0003990ycgBCDScomplement12357091237241Upstream
ABE-0003995dadACDSforward12375711238869Upstream
ABE-0003997dadXCDSforward12388791239949Matches
ABE-0285760mobile_elementforward12401881240289Downstream
ABE-0285759ymgMCDSforward12402601240463Downstream
ABE-0003999cvrACDScomplement12403351242071Downstream
ABE-0004002ldcACDScomplement12421661243080Downstream
ABE-0004006emtACDSforward12431801243791Downstream
ABE-0004009ycgRCDScomplement12437931244527Downstream
ABE-0004014ymgECDSforward12447281244982Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.