Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004006 (emtA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004006 showshow history
Names
emtA sltZ ycgP mltE JW5821 ECK1181 b1193
Product
lytic murein endotransglycosylase E
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1243180 1243791 612 204
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000189 (IPR000189 Prokaryotic transglycosylase, active site) Apr 2008
Automated Process Approved IPR008258 (IPR008258 Transglycosylase SLT domain 1) Apr 2008
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF01464 (PF01464 Transglycosylase SLT domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name emtA Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym mltE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW5821 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1181 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sltZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym ycgP Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1193 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lytic murein endotransglycosylase E Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF01464 Transglycosylase SLT domain Protein Sequence Similarity - PFAM Model Name: PF01464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008258 Transglycosylase SLT domain 1 Protein Sequence Similarity - InterPro Domain: IPR008258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000189 Prokaryotic transglycosylase, active site Protein Sequence Similarity - InterPro Domain: IPR000189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.2.1.- Published Annotation - Swiss-Prot Accession Number: P76009 Feb 2006
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13897 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0C960 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004006 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945655 Published Annotation - Entrez Gene Database ID: 945655
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87081855 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76009 Published Annotation - Swiss-Prot Accession Number: P76009 Jan 2005
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note murein transglycosylase E; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74277.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005384 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002145 emtA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001991 emtA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000604 emtA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002035 emtA CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129534 mltE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104971 mltE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002441 emtA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001567 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002555 mltE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003218 mltE CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003164 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300902 mltE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002000 mltE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003801 mltE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006055 mltE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001246 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009786 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001138 mltE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003156 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008236 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005089 mltE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008946 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077754 emtA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001328 emtA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001641 mltE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009881 mltE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010563 mltE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001395 emtA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005780 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004059 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010392 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009427 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009084 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008849 mltE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006520 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010365 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010310 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008504 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010499 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009937 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009789 mltE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007996 mltE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025744 emtA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005843 emtA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005973 mltE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001500 emtA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001119 emtA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001209 emtA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001569 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001484 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001432 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001451 emtA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175529 emtA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001268 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001954 mltE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131639 emtA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002433 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001384 mltE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002100 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002311 mltE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000407 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004760 mltE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001187 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002102 emtA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004038 emtA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003999 emtA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008123 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005437 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001076 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001074 mltE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001430 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108875 mltE CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082792 mltE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002177 emtA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095852 emtA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003660 CDS
Person Approved Go view Shigella boydii 227 ADV-0002085 mltE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006754 mltE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007828 mltE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001404 mltE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072324 mltE CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0087523 emtA pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001276 mltE CDS
Person Approved Go view Shigella sonnei 046 ADD-0001276 emtA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003245 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000690 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005604 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000856 emtA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000179 emtA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001677 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239609 mltE1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006744 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002154 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004930 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001026 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123403 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008284 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007794 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001282 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008911 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006181 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031595 mltE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008330 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002279 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000846 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006930 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005673 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002433 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002884 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002137 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012432 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004124 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22898mutantTn5 InsertionRequest the StrainABE-0004006emtAmltE::Tn5(KAN-I-SceI) at position 67 in Minus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1238180 to 1248791
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003995dadACDSforward12375711238869Upstream
ABE-0003997dadXCDSforward12388791239949Upstream
ABE-0285760mobile_elementforward12401881240289Upstream
ABE-0285759ymgMCDSforward12402601240463Upstream
ABE-0003999cvrACDScomplement12403351242071Upstream
ABE-0004002ldcACDScomplement12421661243080Upstream
ABE-0004006emtACDSforward12431801243791Matches
ABE-0004009ycgRCDScomplement12437931244527Downstream
ABE-0004014ymgECDSforward12447281244982Downstream
ABE-0004019ycgYCDSforward12451601245600Downstream
ABE-0004021treACDScomplement12456791247376Downstream
ABE-0285435repeat_regionforward12476581247688Downstream
ABE-0004024dhaMCDScomplement12476961249114Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.