Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004021 (treA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004021 showshow history
Names
treA osmA JW1186 ECK1185 tre b1197
Product
periplasmic trehalase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1245679 1247376 1698 566
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001661 (IPR001661 Glycoside hydrolase, family 37) Apr 2008
Automated Process Approved IPR008928 (IPR008928 Six-hairpin glycosidase superfamily) Apr 2008
Automated Process Approved PF01204 (PF01204 Trehalase) Jul 2018
Automated Process Uncurated GH37 (GH37 Glycoside Hydrolase Family 37) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005991 trehalose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001661
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008928
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004555 alpha,alpha-trehalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001661
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name treA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1185 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym osmA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1186 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym tre Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1197 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic trehalase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name trehalase, periplasmic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF01204 Trehalase Protein Sequence Similarity - PFAM Model Name: PF01204
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH37 Glycoside Hydrolase Family 37 Protein Sequence Similarity - CAZy Model Name: GH37
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008928 Six-hairpin glycosidase superfamily Protein Sequence Similarity - InterPro Domain: IPR008928
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001661 Glycoside hydrolase, family 37 Protein Sequence Similarity - InterPro Domain: IPR001661
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.2.1.28 Published Annotation - Swiss-Prot Accession Number: P13482 Feb 2006
Person Uncurated MultiFun 5.5.1 (cell processes; adaptation to stress; osmotic pressure) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.9 (metabolism; central intermediary metabolism; glucose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11017 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004021 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P13482 Published Annotation - Swiss-Prot Accession Number: P13482 Jan 2005
Automated Process Approved db xref GI:1787447 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945757 Published Annotation - Entrez Gene Database ID: 945757
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P13482 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Osmotic adaptation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note trehalase, periplasmic; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006006 - glucose metabolic process; GO_process: GO:0006970 - response to osmotic stress Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74281.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005991 trehalose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001661
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004555 alpha,alpha-trehalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001661
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008928
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005656 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003007 treA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002991 treA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002704 treA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002430 treA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001572 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002551 treA_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003209 treA_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003160 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0300911 treA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001709 treA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001997 treA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003812 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006059 treA CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0001255 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009790 CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001147 treA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003147 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008232 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005093 treA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008942 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077765 treA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001332 treA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001645 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009877 treA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010559 treA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001404 treA CDS
Person Approved Go view Escherichia coli E24377A (ETEC) ADO-0005785 treA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025758 treA pseudogene
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005852 treA CDS
Person Approved Go view Escherichia coli HS ADR-0005977 treA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001123 treA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001213 treA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001565 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001436 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001462 treA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175538 treA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001272 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001945 treA CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285098 treA pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004374 CDS
Person Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001393 treA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002309 treA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000404 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000884 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004203 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000917 treA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003257 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001612 treA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002647 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009314 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003298 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287327 treA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004774 treA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005513 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001190 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002099 treA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005794 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004049 treA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004010 treA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004656 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006356 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005296 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005350 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008120 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005434 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006299 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004484 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001079 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001077 treA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001433 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006548 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008636 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006022 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007097 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0108868 treA pseudogene
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082795 treA pseudogene
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002174 treA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095844 treA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007531 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006863 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007410 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002081 treA pseudogene
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007832 treA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001419 treA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072337 treA CDS
Person Approved Go view Shigella flexneri 301 ABT-0255959 treA CDS
Person Approved Go view Shigella flexneri 8401 BAG-0001286 treA CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0015098 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003427 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1240679 to 1252376
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0003999cvrACDScomplement12403351242071Downstream
ABE-0004002ldcACDScomplement12421661243080Downstream
ABE-0004006emtACDSforward12431801243791Downstream
ABE-0004009ycgRCDScomplement12437931244527Downstream
ABE-0004014ymgECDSforward12447281244982Downstream
ABE-0004019ycgYCDSforward12451601245600Downstream
ABE-0004021treACDScomplement12456791247376Matches
ABE-0285435repeat_regionforward12476581247688Upstream
ABE-0004024dhaMCDScomplement12476961249114Upstream
ABE-0004026dhaLCDScomplement12491251249757Upstream
ABE-0004029dhaKCDScomplement12497681250838Upstream
ABE-0004033dhaRCDSforward12510661252985Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.