Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004026 (dhaL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004026 showshow history
Names
dhaL ycgS ptsD JW5186 ECK1187 dhaK2 b1199
Product
dihydroxyacetone kinase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1249125 1249757 633 211
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012737 (IPR012737 Dihydroxyacetone kinase, subunit L) Apr 2008
Automated Process Approved IPR004007 (IPR004007 DhaL domain) Apr 2008
Automated Process Approved IPR036117 (IPR036117 DhaL domain superfamily) Jul 2018
Automated Process Approved PF02734 (PF02734 DAK2 domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004007
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012737
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004371 glycerone kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004007
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dhaL Published Annotation - PubMed ID: 11350937
Reference: Escherichia coli K-12 		Mar 2008
Person Approved synonym JW5186 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ptsD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1187 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ycgS Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym dhaK2 Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved locus tag b1199 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dihydroxyacetone kinase subunit Experimental - PubMed ID: 11350937
Reference: Escherichia coli K-12 		Mar 2008
Protein Family
Automated Process Approved protein family IPR012737 Dihydroxyacetone kinase, subunit L Protein Sequence Similarity - InterPro Domain: IPR012737
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004007 DhaL domain Protein Sequence Similarity - InterPro Domain: IPR004007
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036117 DhaL domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036117
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02734 DAK2 domain Protein Sequence Similarity - PFAM Model Name: PF02734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.29 Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Cabot, ecabot@wisc.edu
Reference: Escherichia coli K-12 MG1655 		Dec 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13900 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76014 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787449 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004026 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76014 Published Annotation - Swiss-Prot Accession Number: P76014 Jan 2006
Automated Process Approved db xref GeneID:945748 Published Annotation - Entrez Gene Database ID: 945748
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved protein id AAC74283.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004007
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004371 glycerone kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004007
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012737
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006705 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002906 dhaL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002823 dhaL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002542 dhaL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003139 dhaL CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002549 dhaL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003207 dhaL CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006061 dhaL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001257 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009793 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001149 dhaL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003144 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008230 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005096 dhaL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008940 DhaL CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077768 dhaL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001334 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001648 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009874 dhaL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010556 dhaL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001406 dhaL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005787 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009952 dhaL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009804 dhaL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025760 dhaL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005855 dhaL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005980 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001487 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001125 dhaL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001215 dhaL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001562 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001491 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001439 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001465 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175540 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001275 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001941 dhaL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131656 dhaL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004371 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001396 ycgS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001178 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003543 dhaL CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000246 dhaL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003989 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000945 dhaL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003370 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010037 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290644 dhaL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001615 CDS
Person Approved Go view Shigella boydii 227 ADV-0002076 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006761 dhaL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007835 dhaL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072339 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087540 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001288 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000020 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001642 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003264 dhaL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002187 dhaL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003057 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1244125 to 1254757
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004009ycgRCDScomplement12437931244527Downstream
ABE-0004014ymgECDSforward12447281244982Downstream
ABE-0004019ycgYCDSforward12451601245600Downstream
ABE-0004021treACDScomplement12456791247376Downstream
ABE-0285435repeat_regionforward12476581247688Downstream
ABE-0004024dhaMCDScomplement12476961249114Downstream
ABE-0004026dhaLCDScomplement12491251249757Matches
ABE-0004029dhaKCDScomplement12497681250838Upstream
ABE-0004033dhaRCDSforward12510661252985Upstream
ABE-0004035ycgVCDScomplement12530851255952Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.