Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004054 (prs) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004054 showshow history
Names
prs dnaR prsA JW1198 ECK1195 b1207
Product
phosphoribosylpyrophosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1260928 1261875 948 316
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000496
EnteroFam0004054: Trusted threshold=949.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002375 (IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site) Apr 2008
Automated Process Approved IPR000842 (IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site) Apr 2008
Automated Process Approved IPR005946 (IPR005946 Ribose-phosphate pyrophosphokinase) Apr 2008
Automated Process Approved IPR000836 (IPR000836 Phosphoribosyltransferase domain) Apr 2008
Automated Process Approved IPR029099 (IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain) Jul 2018
Automated Process Approved IPR029057 (IPR029057 Phosphoribosyltransferase-like) Jul 2018
Automated Process Approved PF14572 (PF14572 Phosphoribosyl synthetase-associated domain) Jul 2018
Automated Process Approved PF13793 (PF13793 N-terminal domain of ribose phosphate pyrophosphokinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009165 nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005946
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009156 ribonucleoside monophosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044249 cellular biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016978 (DEPRECATED) lipoate-protein ligase B activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004749 ribose phosphate diphosphokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name prs Published Annotation in EcoGene - EG Number: EG10774
Reference: Escherichia coli K-12 MG1655 		Aug 2007
Automated Process Approved synonym prsA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1198 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1195 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym dnaR Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1207 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoribosylpyrophosphate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoribosylpyrophosphate synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004054: Trusted threshold=949.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000496
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Protein Sequence Similarity - PFAM Model Name: PF13793
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029057 Phosphoribosyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR029057
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14572 Phosphoribosyl synthetase-associated domain Protein Sequence Similarity - PFAM Model Name: PF14572
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR029099
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000836 Phosphoribosyltransferase domain Protein Sequence Similarity - InterPro Domain: IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site Protein Sequence Similarity - InterPro Domain: IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005946 Ribose-phosphate pyrophosphokinase Protein Sequence Similarity - InterPro Domain: IPR005946
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site Protein Sequence Similarity - InterPro Domain: IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.6.1 Published Annotation - Swiss-Prot Accession Number: P0A717 Feb 2006
Person Uncurated MultiFun 1.5.2.3 (metabolism; building block biosynthesis; nucleotide; purine ribonucleotide biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787458 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10774 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A717 Published Annotation - Swiss-Prot Accession Number: P0A717 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A717 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004054 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945772 Published Annotation - Entrez Gene Database ID: 945772
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved molecular interaction Interacts with the product of groL ASAP:13568:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of cobB ASAP:3781:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note phosphoribosylpyrophosphate synthetase; GO_process: GO:0009152 - purine ribonucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74291.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009165 nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005946
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009156 ribonucleoside monophosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044249 cellular biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016978 (DEPRECATED) lipoate-protein ligase B activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004749 ribose phosphate diphosphokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000842
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000496 prs CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001038 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000383 prs CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000297 prs CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000550 prs CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000400 prs CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002723 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001925 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129439 prsA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104885 prsA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104278 prsA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001835 prs CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001653 prs CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002523 prs CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003183 prs_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006851 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014549 prsA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002057 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003104 prs CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301047 prsA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001766 prsA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001947 prs CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003819 prs CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006070 prs CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001265 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009801 prs CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001156 prsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003136 prs CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008221 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005106 prs CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008931 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077776 prsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001343 prs CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001657 prsA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009865 prs CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001413 prs CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005797 prs CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001404 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010400 prs CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009435 prs CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009092 prs CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006528 prs CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010320 prs CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008512 prs CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010507 prs CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009961 prs CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009812 prs CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008006 prs CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025768 prsA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005863 prs CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005989 prs CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001479 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001133 prsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001223 prsA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001473 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001284 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001934 prs CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131664 prsA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004363 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001405 prsA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001862 prs CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002587 prs CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002244 prsA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000357 prs CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006570 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000994 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004110 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001011 prs CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003125 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001697 prs CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002525 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010092 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002407 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289714 prs CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004832 prsA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062449 prsA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001360 prs CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001756 prs CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003360 prsA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007019 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141539 prsA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001132 prsA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005533 prs CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001219 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002079 prsA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005813 prs CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004110 prsA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004067 prsA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004674 prs CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006339 prs CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005279 prs CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005333 prs CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008100 prs CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005414 prs CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006278 prs CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004505 prs CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001095 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001093 prsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001456 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006528 prs CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008653 prs CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006003 prs CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007079 prs CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108834 prsA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082810 prsA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002155 prsA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095796 prsA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007550 prs CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006844 prs CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007393 prs CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003807 prs CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267479 prsA CDS
Person Approved Go view Shigella boydii 227 ADV-0002062 prsA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006774 prs CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001431 prsA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072347 prsA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087548 prsA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001296 prsA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002164 prsA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002259 VC2183 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000523 prsA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003769 prs CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000346 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007005 prs CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002611 prsA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000274 prsA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000136 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238751 prsA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006577 prs CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001695 prsA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004505 prs CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001423 prsA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121940 prsA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005440 prs CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006631 prs CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001258 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008214 prs CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005857 prs CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032012 prsA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005970 prs CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001807 prsA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001315 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007741 prs CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006043 prs CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002081 prsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002445 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002584 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014753 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003539 prs CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1255928 to 1266875
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004035ycgVCDScomplement12530851255952Downstream
ABE-0004038ychFCDScomplement12567211257812Downstream
ABE-0004043pthCDScomplement12579291258513Downstream
ABE-0004049ychHCDSforward12587911259069Downstream
ABE-0004051dauACDScomplement12591241260803Downstream
ABE-0004054prsCDScomplement12609281261875Matches
ABE-0285715matS3protein_bindforward12619931262005Upstream
ABE-0004056ispECDScomplement12620261262877Upstream
ABE-0004059lolBCDScomplement12628771263500Upstream
ABE-0004064hemACDSforward12637141264970Upstream
ABE-0004066prfACDSforward12650121266094Upstream
ABE-0004068prmCCDSforward12660941266927Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.