Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004056 (ispE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004056 showshow history
Names
ispE ipk JW1199 ECK1196 ychB b1208
Product
4-diphosphocytidyl-2-C-methylerythritol kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1262026 1262877 852 284
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000497
EnteroFam0004056: Trusted threshold=724.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004424 (IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase) Apr 2008
Automated Process Approved IPR014721 (IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup) Apr 2008
Automated Process Approved IPR006204 (IPR006204 GHMP kinase N-terminal domain) Apr 2008
Automated Process Approved IPR013750 (IPR013750 GHMP kinase, C-terminal domain) Apr 2008
Automated Process Approved IPR020568 (IPR020568 Ribosomal protein S5 domain 2-type fold) Jul 2018
Automated Process Approved IPR036554 (IPR036554 GHMP kinase, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF00288 (PF00288 GHMP kinases N terminal domain) Jul 2018
Automated Process Approved PF08544 (PF08544 GHMP kinases C terminal) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004424
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ispE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1196 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ipk Published Annotation - GenBank Accession Number: AE006468
Reference: Salmonella Typhimurium LT2 		Sep 2007
Person Approved synonym JW1199 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ychB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b1208 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 4-diphosphocytidyl-2-C-methylerythritol kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Published Annotation - Swiss-Prot Accession Number: P62615
Reference: Escherichia coli K-12 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0004056: Trusted threshold=724.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000497
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Protein Sequence Similarity - InterPro Domain: IPR014721
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Protein Sequence Similarity - InterPro Domain: IPR004424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00288 GHMP kinases N terminal domain Protein Sequence Similarity - PFAM Model Name: PF00288
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006204 GHMP kinase N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR006204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020568 Ribosomal protein S5 domain 2-type fold Protein Sequence Similarity - InterPro Domain: IPR020568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036554 GHMP kinase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036554
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013750 GHMP kinase, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR013750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08544 GHMP kinases C terminal Protein Sequence Similarity - PFAM Model Name: PF08544
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.148 Published Annotation - Swiss-Prot Accession Number: P62615 Feb 2006
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P62615 Published Annotation - Swiss-Prot Accession Number: P62615 Jan 2006
Automated Process Approved db xref GeneID:945774 Published Annotation - Entrez Gene Database ID: 945774
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P62615 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004056 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11294 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787459 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74292.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004424
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000497 ispE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001039 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001101 ispE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000677 ispE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000406 ispE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000649 ispE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002724 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001926 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129440 ychB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104279 ipk CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001836 ispE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001654 ispE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002522 ipk CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003182 ipk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006852 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014550 ispE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002056 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003103 ispE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301052 ipk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001767 ispE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001946 ispE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003820 ispE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006071 ispE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001266 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009802 ispE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001157 ychB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003135 ispE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008220 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008930 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077777 ispE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001344 ispE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001658 ispE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010848 ispE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001414 ispE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005798 ispE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001405 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009436 ispE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009093 ispE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008859 ispE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006529 ispE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010508 ispE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009962 ispE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009813 ispE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008007 ispE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025769 ispE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005864 ispE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005990 ispE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001478 ipk CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001134 ispE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001224 ispE CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001474 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175550 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001285 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001933 ispE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131665 ispE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004362 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001406 ychB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001861 ispE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002588 ispE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002243 ispE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000356 ispE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006571 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000995 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004109 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001012 ispE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003124 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001698 ispE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002524 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010091 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002408 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289715 ispE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004833 ispE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062450 ispE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001361 ispE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001757 ispE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003361 ispE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007018 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141541 ispE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001134 ispE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005535 ispE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001221 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002078 ispE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005815 ispE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004115 ipk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004072 ipk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004676 ispE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006337 ispE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005277 ispE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005331 ispE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008098 ispE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005412 ispE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006276 ispE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004507 ispE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001096 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001094 ispE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001459 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006526 ispE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008655 ispE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006001 ispE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007077 ispE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108833 ispE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082811 ispE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002152 ipk CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095791 ispE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007552 ispE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006842 ispE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007391 ispE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003806 ispE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267478 ispE CDS
Person Approved Go view Shigella boydii 227 ADV-0002061 ychB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006775 ispE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001432 ychB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072348 ispE CDS
Person Approved Go view Shigella flexneri 301 ABT-0087549 ispE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001297 ychB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002163 ispE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002258 VC2182 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000522 ispE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003771 ispE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000345 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007003 ipk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002612 ispE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000273 ispE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000137 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238752 ispE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006576 ispE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001697 ispE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004506 ispE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001422 ipk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121946 ispE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005441 ispE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006630 ispE CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008213 ispE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005856 ispE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032010 ispE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005969 ispE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001809 ispE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001313 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007740 ispE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006042 ispE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002082 ispE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002447 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002582 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014749 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003540 ispE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1257026 to 1267877
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004038ychFCDScomplement12567211257812Downstream
ABE-0004043pthCDScomplement12579291258513Downstream
ABE-0004049ychHCDSforward12587911259069Downstream
ABE-0004051dauACDScomplement12591241260803Downstream
ABE-0004054prsCDScomplement12609281261875Downstream
ABE-0285715matS3protein_bindforward12619931262005Downstream
ABE-0004056ispECDScomplement12620261262877Matches
ABE-0004059lolBCDScomplement12628771263500Overlaps Upstream
ABE-0004064hemACDSforward12637141264970Upstream
ABE-0004066prfACDSforward12650121266094Upstream
ABE-0004068prmCCDSforward12660941266927Upstream
ABE-0004071ychQCDSforward12669241267316Upstream
ABE-0004074ychACDSforward12673201268129Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.