Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004064 (hemA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004064 showshow history
Names
hemA gtrA JW1201 ECK1198 b1210
Product
glutamyl tRNA reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1263714 1264970 1257 419
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000499
EnteroFam0004064: Trusted threshold=1126.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000343 (IPR000343 Glutamyl-tRNA reductase) Apr 2008
Automated Process Approved IPR003462 (IPR003462 Ornithine cyclodeaminase/mu-crystallin) Apr 2008
Automated Process Approved IPR006151 (IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase) Apr 2008
Automated Process Approved IPR015895 (IPR015895 Glutamyl-tRNA reductase, N-terminal) Jul 2018
Automated Process Approved IPR015896 (IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain) Jul 2018
Automated Process Approved IPR036343 (IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036453 (IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF05201 (PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain) Jul 2018
Automated Process Approved PF01488 (PF01488 Shikimate / quinate 5-dehydrogenase) Jul 2018
Automated Process Approved PF00745 (PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015895, IPR015896, IPR000343, IPR036343, IPR036453
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0033014 tetrapyrrole biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008883 glutamyl-tRNA reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hemA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1201 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym gtrA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1198 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1210 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamyl tRNA reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glutamyl-tRNA reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004064: Trusted threshold=1126.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000499
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Protein Sequence Similarity - InterPro Domain: IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003462 Ornithine cyclodeaminase/mu-crystallin Protein Sequence Similarity - InterPro Domain: IPR003462
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000343 Glutamyl-tRNA reductase Protein Sequence Similarity - InterPro Domain: IPR000343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Protein Sequence Similarity - PFAM Model Name: PF00745
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036343
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036453
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01488 Shikimate / quinate 5-dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF01488
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR015896
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015895 Glutamyl-tRNA reductase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR015895
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF05201
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.2.1.70 Published Annotation - Swiss-Prot Accession Number: P0A6X1 Feb 2006
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787461 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945777 Published Annotation - Entrez Gene Database ID: 945777
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A6X1 Published Annotation - Swiss-Prot Accession Number: P0A6X1 Jan 2006
Automated Process Approved db xref ASAP:ABE-0004064 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6X1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10427 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutamyl-tRNA reductase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74294.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015895, IPR015896, IPR000343, IPR036343, IPR036453
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0033014 tetrapyrrole biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008883 glutamyl-tRNA reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000499 hemA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001041 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001222 hemA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000782 hemA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001393 hemA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000394 hemA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002726 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001929 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001838 hemA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001656 hemA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002520 hemA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003180 hemA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006855 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014552 hemA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002054 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003101 hemA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301059 hemA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001769 hemA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001944 hemA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003822 hemA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006073 hemA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001268 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009804 hemA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001159 hemA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003133 hemA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008217 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005109 hemA CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010389 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077779 hemA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001346 hemA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001660 hemA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008536 hemA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001416 hemA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005800 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001407 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010404 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009438 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009095 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008861 hemA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006531 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009467 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010324 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010510 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008009 hemA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025771 hemA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005866 hemA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005992 hemA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001476 hemA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001136 hemA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001226 hemA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001547 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001506 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001454 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001476 hemA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001287 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001931 hemA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131667 hemA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004360 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001408 hemA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001858 hemA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002590 hemA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002241 hemA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000354 hemA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006574 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000997 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004107 hemA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001014 hemA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003122 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001700 hemA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002522 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010089 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002411 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289718 hemA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004835 hemA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062452 hemA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001398 hemA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000558 hemA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003364 hemA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007015 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141543 hemA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001137 hemA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005538 hemA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001223 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002076 hemA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005818 hemA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004123 hemA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004080 hemA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004679 hemA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006334 hemA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005274 hemA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005328 hemA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008095 hemA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005409 hemA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006273 hemA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004510 hemA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001098 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001096 hemA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001462 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006523 hemA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008658 hemA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005998 hemA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007074 hemA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108828 hemA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082813 hemA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002149 hemA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095784 hemA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007555 hemA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006839 hemA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007388 hemA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003803 hemA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267476 hemA CDS
Person Approved Go view Shigella boydii 227 ADV-0002059 hemA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006777 hemA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001434 hemA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072350 hemA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087551 hemA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001299 hemA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002161 hemA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002256 VC2180 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000519 hemA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003775 hemA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000343 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006995 hemA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002614 hemA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000271 hemA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000139 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238754 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006574 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001700 hemA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004508 hemA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001420 hemA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121949 hemA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005443 hemA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006628 hemA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002852 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008211 hemA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005854 hemA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032008 hemA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005967 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001812 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001310 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007738 hemA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006040 hemA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002084 hemA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002450 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002579 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014739 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003542 hemA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1258714 to 1269970
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004049ychHCDSforward12587911259069Upstream
ABE-0004051dauACDScomplement12591241260803Upstream
ABE-0004054prsCDScomplement12609281261875Upstream
ABE-0285715matS3protein_bindforward12619931262005Upstream
ABE-0004056ispECDScomplement12620261262877Upstream
ABE-0004059lolBCDScomplement12628771263500Upstream
ABE-0004064hemACDSforward12637141264970Matches
ABE-0004066prfACDSforward12650121266094Downstream
ABE-0004068prmCCDSforward12660941266927Downstream
ABE-0004071ychQCDSforward12669241267316Downstream
ABE-0004074ychACDSforward12673201268129Downstream
ABE-0004077kdsACDSforward12681651269019Downstream
ABE-0047280ldrACDScomplement12691681269275Downstream
ABE-0047243rdlAncRNAforward12693231269386Downstream
ABE-0047281ldrBCDScomplement12697031269810Downstream
ABE-0047244rdlBncRNAforward12698581269921Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.