Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004082 (chaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004082 showshow history
Names
chaA JW1207 ECK1210 b1216
Product
calcium/sodium:proton antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1270749 1271849 1101 367
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000504
EnteroFam0004082: Trusted threshold=937.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004713 (IPR004713 Calcium/proton exchanger) Apr 2008
Automated Process Approved IPR004837 (IPR004837 Sodium/calcium exchanger membrane region) Apr 2008
Automated Process Approved PF01699 (PF01699 Sodium/calcium exchanger protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004837, IPR004713
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name chaA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1207 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1210 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1216 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product calcium/sodium:proton antiporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name sodium-calcium/proton antiporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sodium/calcium:proton antiporter (CaCA family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004082: Trusted threshold=937.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000504
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01699 Sodium/calcium exchanger protein Protein Sequence Similarity - PFAM Model Name: PF01699
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004713 Calcium/proton exchanger Protein Sequence Similarity - InterPro Domain: IPR004713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004837 Sodium/calcium exchanger membrane region Protein Sequence Similarity - InterPro Domain: IPR004837
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.19 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Ca2+:Cation Antiporter (CaCA) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.25 (transport; substrate; Ca+/ H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945790 Published Annotation - Entrez Gene Database ID: 945790
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P31801 Published Annotation - Swiss-Prot Accession Number: P31801 Jan 2005
Automated Process Approved db xref GI:1787468 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31801 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004082 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11753 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sodium-calcium/proton antiporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74300.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004837, IPR004713
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238381 chaA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121810 chaA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032071 chaA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002036 chaA CDS
Member
Person Approved Go view EnteroFams ADX-0000504 chaA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001822 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001949 chaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001915 chaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001519 chaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001780 chaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002617 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003326 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001844 chaA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001662 chaA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002514 chaA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003174 chaA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006534 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014743 chaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002324 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003096 chaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301082 chaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001777 chaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001937 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003835 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006082 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001275 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009812 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001165 chaA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003126 chaA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008208 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005117 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006868 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077787 chaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001354 chaA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001667 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008527 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008587 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001424 chaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005808 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001415 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010412 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009446 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009103 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008869 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006539 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009460 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010332 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010032 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010518 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009922 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009221 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008017 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025779 chaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005873 chaA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006001 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001469 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001142 chaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001238 chaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001539 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001514 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001465 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001484 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175560 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001296 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001923 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131673 chaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004352 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001415 chaA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001526 chaA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002501 chaA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002235 chaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000347 chaA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006457 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001003 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004101 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001021 chaA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003116 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001706 chaA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002516 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010083 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002417 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289724 chaA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004841 chaA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062282 chaA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001003 chaA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003616 chaA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007202 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005544 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001229 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002070 chaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005824 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004145 chaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004099 chaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004685 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006328 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005268 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005322 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008089 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005403 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006267 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004516 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001104 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001102 chaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001468 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006516 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008932 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005992 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007068 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107688 chaA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083394 chaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002143 chaA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095765 chaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007561 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006833 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007382 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002863 chaA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264556 chaA CDS
Person Approved Go view Shigella boydii 227 ADV-0002052 chaA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006786 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007038 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001441 chaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072356 chaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087557 chaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001308 chaA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002154 chaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000381 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007110 chaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002882 chaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000303 chaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000100 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238381 chaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006636 chaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001627 chaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004442 chaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001471 chaA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121810 chaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005377 chaA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000932 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009140 chaA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032071 chaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006032 chaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001387 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007224 chaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006097 chaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002036 chaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002378 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002646 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014718 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003548 chaA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1265749 to 1276849
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004066prfACDSforward12650121266094Downstream
ABE-0004068prmCCDSforward12660941266927Downstream
ABE-0004071ychQCDSforward12669241267316Downstream
ABE-0004074ychACDSforward12673201268129Downstream
ABE-0004077kdsACDSforward12681651269019Downstream
ABE-0047280ldrACDScomplement12691681269275Downstream
ABE-0047243rdlAncRNAforward12693231269386Downstream
ABE-0047281ldrBCDScomplement12697031269810Downstream
ABE-0047244rdlBncRNAforward12698581269921Downstream
ABE-0047282ldrCCDScomplement12702381270345Downstream
ABE-0047245rdlCncRNAforward12703931270456Downstream
ABE-0004082chaACDScomplement12707491271849Matches
ABE-0004087chaBCDSforward12721191272349Upstream
ABE-0004089chaCCDSforward12725071273202Upstream
ABE-0004091ychNCDScomplement12732461273599Upstream
ABE-0004095ychOCDSforward12737841275178Upstream
ABE-0004097narLCDScomplement12751791275829Upstream
ABE-0004099narXCDScomplement12758221277618Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.