Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004138 (purU) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004138 showshow history
Names
purU ychI JW1220 ECK1227 tgs b1232
Product
formyltetrahydrofolate hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1287782 1288624 843 281
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Uncurated ADX-0000506
EnteroFam0004138: Trusted threshold=819.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002376 (IPR002376 Formyl transferase, N-terminal) Apr 2008
Automated Process Approved IPR004810 (IPR004810 Formyltetrahydrofolate deformylase) Apr 2008
Automated Process Approved IPR002912 (IPR002912 ACT domain) Apr 2008
Automated Process Approved IPR036477 (IPR036477 Formyl transferase, N-terminal domain superfamily) Jul 2018
Automated Process Approved PF01842 (PF01842 ACT domain) Jul 2018
Automated Process Approved PF00551 (PF00551 Formyl transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004810
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008864 formyltetrahydrofolate deformylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004810
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name purU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1220 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ychI Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1227 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym tgs Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1232 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product formyltetrahydrofolate hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name formyltetrahydrofolate hydrolase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004138: Trusted threshold=819.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000506
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01842 ACT domain Protein Sequence Similarity - PFAM Model Name: PF01842
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004810 Formyltetrahydrofolate deformylase Protein Sequence Similarity - InterPro Domain: IPR004810
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036477 Formyl transferase, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036477
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002912 ACT domain Protein Sequence Similarity - InterPro Domain: IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002376 Formyl transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00551 Formyl transferase Protein Sequence Similarity - PFAM Model Name: PF00551
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.1.10 Published Annotation - Swiss-Prot Accession Number: P37051 Feb 2006
Automated Process Uncurated EC number 2.1.2.- Published Annotation - Database Name: EC2GO: GO:0016742
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.3 (metabolism; building block biosynthesis; nucleotide; purine ribonucleotide biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11819 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945827 Published Annotation - Entrez Gene Database ID: 945827
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37051 Published Annotation - Swiss-Prot Accession Number: P37051 Jan 2005
Automated Process Approved db xref ASAP:ABE-0004138 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37051 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787483 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009152 - purine ribonucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74314.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004810
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008864 formyltetrahydrofolate deformylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004810
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001097 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000783 purU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000673 purU CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001529 purU CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000735 purU CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002824 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002081 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001868 purU CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001681 purU CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002497 purU CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003158 purU CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007010 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020623 purU CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001921 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003072 purU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302117 purU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002141 purU CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001633 purU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003860 purU CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006099 purU CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001291 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009829 purU CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001178 purU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003112 purU CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008187 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005134 purU CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006852 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077809 purU CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001368 purU CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001682 purU CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008511 purU CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008604 purU CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001444 purU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005823 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001430 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010430 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009464 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009122 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008888 purU CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006557 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009442 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010350 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010047 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010533 purU CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009903 purU CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009236 purU CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008035 purU CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025794 purU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005891 purU CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006017 purU CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001156 purU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001255 purU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001526 purU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001527 purU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001478 purU CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001506 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175575 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001311 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001908 purU CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131688 purU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004338 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001432 purU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001997 purU CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002701 purU CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002212 purU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000322 purU CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006704 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001475 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003568 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001446 purU CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002628 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002162 purU CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002048 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009939 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001700 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286855 purU CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005302 purU CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062597 purU CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001392 purU CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000604 purU CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002318 purU CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006844 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142583 purU CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004388 purU-3 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005565 purU CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001244 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002041 purU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005844 purU CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004196 purU CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004148 purU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004706 purU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006308 purU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005250 purU CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005307 purU CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004765 purU CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005383 purU CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006248 purU CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004534 purU CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001123 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001122 purU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001494 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006496 purU CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008722 purU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005973 purU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007052 purU CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107714 purU CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083381 purU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002124 purU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095713 purU CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007583 purU CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005962 purU CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008710 purU CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003064 purU CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265190 purU CDS
Person Approved Go view Shigella boydii 227 ADV-0002039 purU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006801 purU CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007024 purU CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001461 purU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072372 purU CDS
Person Approved Go view Shigella flexneri 301 ABT-0087571 purU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001321 purU CDS
Person Approved Go view Shigella sonnei 046 ADD-0002140 purU CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002067 VC1992 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000545 purU CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004449 purU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002681 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006601 purU CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003526 purU CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002395 purU CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002970 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239003 purU CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006447 purU CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001849 purU_1 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004665 purU CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004341 purU_1 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005597 purU CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007751 purU CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007546 purU CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005916 purU CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031859 purU_1 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005809 purU CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001974 purU_1 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001149 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007194 purU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005942 purU CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002181 purU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002570 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002459 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014653 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003560 purU CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1282782 to 1293624
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004119narGCDSforward12798641283607Downstream
ABE-0004121narHCDSforward12836041285142Downstream
ABE-0004123narJCDSforward12851391285849Downstream
ABE-0004125narICDSforward12858491286526Downstream
ABE-0285436repeat_regionforward12865941286665Downstream
ABE-0047246rttRncRNAcomplement12870661287236Downstream
ABE-0004131tprCDScomplement12870871287176Downstream
ABE-0004134tyrVtRNAcomplement12872441287328Downstream
ABE-0004136tyrTtRNAcomplement12875381287622Downstream
ABE-0004138purUCDScomplement12877821288624Matches
ABE-0004140ychJCDScomplement12886741289132Upstream
ABE-0004144rssACDSforward12892451290150Upstream
ABE-0004147rssBCDSforward12902421291255Upstream
ABE-0004150galUCDSforward12914571292365Upstream
ABE-0004152hnsCDScomplement12925091292922Upstream
ABE-0004157tdkCDSforward12935271294144Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.