Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004150 (galU) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004150 showshow history
Names
galU ychD verA JW1224 ECK1231 b1236
Product
glucose-1-phosphate uridylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1291457 1292365 909 303
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005771 (IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type) Apr 2008
Automated Process Approved IPR005835 (IPR005835 Nucleotidyl transferase domain) Apr 2008
Automated Process Approved IPR029044 (IPR029044 Nucleotide-diphospho-sugar transferases) Jul 2018
Automated Process Approved PF00483 (PF00483 Nucleotidyl transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006012 galactose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006011 UDP-glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name galU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1231 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ychD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym verA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1224 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1236 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glucose-1-phosphate uridylyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glucose-1-phosphate uridylyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF00483 Nucleotidyl transferase Protein Sequence Similarity - PFAM Model Name: PF00483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029044 Nucleotide-diphospho-sugar transferases Protein Sequence Similarity - InterPro Domain: IPR029044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005835 Nucleotidyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type Protein Sequence Similarity - InterPro Domain: IPR005771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.9 Published Annotation - Swiss-Prot Accession Number: P0AEP3 Feb 2006
Automated Process Uncurated EC number 2.7.7.- Published Annotation - Database Name: EC2GO: GO:0016779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.7 (metabolism; central intermediary metabolism; galactose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.9 (metabolism; central intermediary metabolism; glucose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.5 (cell processes; adaptation to stress; dessication) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11319 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787488 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEP3 Published Annotation - Swiss-Prot Accession Number: P0AEP3 Jan 2006
Automated Process Approved db xref GeneID:945730 Published Annotation - Entrez Gene Database ID: 945730
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEP3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004150 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006012 - galactose metabolic process; GO_process: GO:0006006 - glucose metabolic process; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74318.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006011 UDP-glucose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006012 galactose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001095 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000322 galU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000135 galU CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002349 galU CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000204 galU CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002820 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002077 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001872 galU CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001686 galU CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002493 galU CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003153 galU CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007005 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020647 galU CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001925 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003068 galU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302110 galU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002137 galU CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001636 galU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003865 galU CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006103 galU CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001295 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009833 galU CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001182 galU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003108 galU CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008183 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005138 galU CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006848 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077813 galU CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001372 galU CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001686 galU CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008507 galU CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008608 galU CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001448 galU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005827 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001434 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010434 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009468 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008892 galU CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006561 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009438 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010354 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010051 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010537 galU CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009899 galU CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009240 galU CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008039 galU CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025798 galU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005895 galU CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006021 galU CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001160 galU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001259 galU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001522 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001531 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001482 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001510 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175579 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001315 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001904 galU CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131692 galU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004334 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001436 galU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001381 galU CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002705 galU CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002208 galU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000318 galU CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006698 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001471 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003572 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001442 galU CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002632 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002158 galU CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002052 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009935 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001704 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286851 galU CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005299 galU CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062593 galU CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001264 galU CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001787 galU CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002314 galU CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006849 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142573 galU CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003163 galU CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005569 galU CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001248 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002037 galU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005848 galU CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004209 galU CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004160 galU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004710 galU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006304 galU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005246 galU CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005303 galU CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004761 galU CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005379 galU CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006244 galU CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004538 galU CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001127 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001126 galU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001499 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006492 galU CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008726 galU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005969 galU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007048 galU CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107723 galU CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083377 galU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002120 galU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095702 galU CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007587 galU CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005958 galU CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008706 galU CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003068 galU CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265231 galU CDS
Person Approved Go view Shigella boydii 227 ADV-0002035 galU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006805 galU CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007020 galU CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001465 galU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072376 galU CDS
Person Approved Go view Shigella flexneri 301 ABT-0087575 galU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001325 galU CDS
Person Approved Go view Shigella sonnei 046 ADD-0002136 galU CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000434 VC0395 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000544 galU CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004444 galU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000441 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007985 galU CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000527 galU CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001358 galU CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001330 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237673 galU1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007299 galU CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001017 galU CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005668 galU CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001824 galU CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120400 galU CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005674 galU CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004370 galU CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000893 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008964 galU CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004909 galU CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032363 galU CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007762 galU CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002933 galU CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001718 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006576 galU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006421 galU CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001623 galU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001973 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003006 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014635 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003564 galU CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1286457 to 1297365
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004125narICDSforward12858491286526Upstream
ABE-0285436repeat_regionforward12865941286665Upstream
ABE-0047246rttRncRNAcomplement12870661287236Upstream
ABE-0004131tprCDScomplement12870871287176Upstream
ABE-0004134tyrVtRNAcomplement12872441287328Upstream
ABE-0004136tyrTtRNAcomplement12875381287622Upstream
ABE-0004138purUCDScomplement12877821288624Upstream
ABE-0004140ychJCDScomplement12886741289132Upstream
ABE-0004144rssACDSforward12892451290150Upstream
ABE-0004147rssBCDSforward12902421291255Upstream
ABE-0004150galUCDSforward12914571292365Matches
ABE-0004152hnsCDScomplement12925091292922Downstream
ABE-0004157tdkCDSforward12935271294144Downstream
ABE-0004159insZ_3CDSpcomplement12944261295016Downstream
ABE-0285106insZpseudogenecomplement12944261295322Downstream
ABE-0285141ISZmobile_elementcomplement12944261295405Downstream
ABE-0004161insZ_2CDSpcomplement12949681295198Downstream
ABE-0004164adhECDScomplement12954461298121Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.