Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004157 (tdk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004157 showshow history
Names
tdk JW1226 ECK1233 b1238
Product
thymidine kinase/deoxyuridine kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1293527 1294144 618 206
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000510
EnteroFam0004157: Trusted threshold=508.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001267 (IPR001267 Thymidine kinase) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00265 (PF00265 Thymidine kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004797 thymidine kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tdk Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1226 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1233 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1238 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thymidine kinase/deoxyuridine kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name thymidine kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004157: Trusted threshold=508.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000510
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00265 Thymidine kinase Protein Sequence Similarity - PFAM Model Name: PF00265
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001267 Thymidine kinase Protein Sequence Similarity - InterPro Domain: IPR001267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.21 Published Annotation - Swiss-Prot Accession Number: P23331 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004157 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945834 Published Annotation - Entrez Gene Database ID: 945834
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787490 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23331 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10994 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P23331 Published Annotation - Swiss-Prot Accession Number: P23331 Jan 2005
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note thymidine kinase; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74320.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004797 thymidine kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001267
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000510 tdk CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001093 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000913 tdk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001238 tdk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000787 tdk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001521 tdk CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002818 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002075 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001877 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001689 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002491 tdk CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003151 tdk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007003 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020645 tdk CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001927 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003066 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302094 tdk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002133 tdk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001640 tdk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003867 tdk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006106 tdk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001297 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009835 tdk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001184 tdk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003105 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008181 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005140 tdk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006846 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077816 tdk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001375 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001688 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008505 tdk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008610 tdk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001450 tdk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005829 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001436 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010437 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009471 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010675 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008895 tdk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006564 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009435 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010357 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010054 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010540 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009896 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009243 tdk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008042 tdk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025800 tdk CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005898 tdk CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006024 tdk CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001162 tdk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001261 tdk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001520 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001533 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001484 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001513 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175581 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001317 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001901 tdk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131694 tdk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004332 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001440 tdk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001991 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002708 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002206 tdk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000316 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006696 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001466 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003577 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001438 tdk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002636 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002154 tdk CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002056 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009931 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001708 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286845 tdk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005295 tdk CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062591 tdk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004340 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003893 tdk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002312 tdk CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006851 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142562 tdk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005571 tdk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001250 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002033 tdk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005850 tdk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004214 tdk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004165 tdk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004712 tdk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006302 tdk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005244 tdk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005301 tdk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004759 tdk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005377 tdk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006242 tdk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004540 tdk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001129 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001128 tdk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001502 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006490 tdk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008728 tdk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005967 tdk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007046 tdk CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107727 tdk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083375 tdk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002116 tdk_2 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095695 tdk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007589 tdk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005956 tdk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008704 tdk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003072 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266763 CDS
Person Approved Go view Shigella boydii 227 ADV-0002033 tdk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006807 tdk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007017 tdk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001467 tdk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072378 tdk CDS
Person Approved Go view Shigella flexneri 301 ABT-0087577 tdk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001327 tdk CDS
Person Approved Go view Shigella sonnei 046 ADD-0002134 tdk CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001235 VC1167 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004435 tdk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002686 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006579 tdk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003519 tdk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002390 tdk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002975 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239008 tdk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006279 tdk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001854 tdk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004671 tdk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001274 tdk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122422 tdk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005604 tdk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007745 tdk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003064 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007538 tdk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005923 tdk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031854 tdk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005802 tdk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001979 tdk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001143 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007187 tdk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005935 tdk CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002186 tdk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002577 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002452 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014629 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003566 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1288527 to 1299144
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004138purUCDScomplement12877821288624Upstream
ABE-0004140ychJCDScomplement12886741289132Upstream
ABE-0004144rssACDSforward12892451290150Upstream
ABE-0004147rssBCDSforward12902421291255Upstream
ABE-0004150galUCDSforward12914571292365Upstream
ABE-0004152hnsCDScomplement12925091292922Upstream
ABE-0004157tdkCDSforward12935271294144Matches
ABE-0004159insZ_3CDSpcomplement12944261295016Downstream
ABE-0285106insZpseudogenecomplement12944261295322Downstream
ABE-0285141ISZmobile_elementcomplement12944261295405Downstream
ABE-0004161insZ_2CDSpcomplement12949681295198Downstream
ABE-0004164adhECDScomplement12954461298121Downstream
ABE-0285806ychTCDSforward12985141298567Downstream
ABE-0004168ychECDSforward12985981299245Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.