Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004164 (adhE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004164 showshow history
Names
adhE JW1228 ECK1235 ana adhC b1241
Product
alcohol/acetaldehyde-CoA dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1295446 1298121 2676 892
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000511
EnteroFam0004164: Trusted threshold=2642; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012079 (IPR012079 Bifunctional aldehyde-alcohol dehydrogenase) Apr 2008
Automated Process Approved IPR001670 (IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase gldA) Apr 2008
Automated Process Approved IPR015590 (IPR015590 Aldehyde dehydrogenase domain) Jul 2018
Automated Process Approved IPR016161 (IPR016161 Aldehyde/histidinol dehydrogenase) Jul 2018
Automated Process Approved PF00465 (PF00465 Iron-containing alcohol dehydrogenase) Jul 2018
Automated Process Approved PF00171 (PF00171 Aldehyde dehydrogenase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006113 fermentation GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2Go
Reference: Escherichia coli K-12 MG1655 		Oct 2006
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001670, IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006066 alcohol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012079
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004022 alcohol dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012079
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name adhE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym adhC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1228 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1235 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ana Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1241 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product alcohol/acetaldehyde-CoA dehydrogenase Experimental - PubMed ID: 17280641
Reference: Escherichia coli BL21(DE3) 		Nov 2011
Automated Process Approved alternate product name fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0004164: Trusted threshold=2642; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000511
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase gldA Protein Sequence Similarity - InterPro Domain: IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00465 Iron-containing alcohol dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00465
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00171 Aldehyde dehydrogenase family Protein Sequence Similarity - PFAM Model Name: PF00171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012079 Bifunctional aldehyde-alcohol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR012079
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015590 Aldehyde dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR015590
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016161 Aldehyde/histidinol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.2.1.10 Published Annotation - Swiss-Prot Accession Number: P0A9Q7 Feb 2006
Person Approved EC number 1.1.1.1 Published Annotation - Swiss-Prot Accession Number: P0A9Q7 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment A previously described pyruvate formate-lyase deactivase activity was not observed in an experimental assay. Experimental - PubMed ID: 17280641
Reference: Escherichia coli BL21(DE3) 		Nov 2011
Automated Process Approved db xref EcoGene:EG10031 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945837 Published Annotation - Entrez Gene Database ID: 945837
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9Q7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787493 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9Q7 Published Annotation - Swiss-Prot Accession Number: P0A9Q7 Jan 2006
Person Approved function enzyme; Energy metabolism, carbon: Fermentation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase; GO_process: GO:0006113 - fermentation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74323.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by acetate; expression is induced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006066 alcohol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012079
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001670, IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006113 fermentation GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2Go
Reference: Escherichia coli K-12 MG1655 		Oct 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004022 alcohol dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012079
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000511 adhE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000099 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000571 adhE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000925 adhE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000149 adhE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000218 adhE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002817 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001878 adhE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001690 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002490 adhE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003150 adhE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007002 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020642 adhE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001928 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003065 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302038 adhE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002118 adhE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001641 adhE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003868 adhE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006107 adhE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001299 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009838 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001186 adhE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003103 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008179 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005141 adhE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006842 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077819 adhE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001376 adhE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001692 adhE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008501 adhE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008611 adhE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001454 adhE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005831 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001437 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010438 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009472 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010676 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008896 adhE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006565 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009434 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010358 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010055 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010541 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009895 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009244 adhE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008043 adhE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025801 adhE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005900 adhE_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006026 adhE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001836 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001165 adhE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001265 adhE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001519 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001617 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001486 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001515 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175583 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001318 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001900 adhE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131695 adhE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004331 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001442 adhE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001990 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002709 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002205 adhE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000315 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006695 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001465 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003578 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001437 adhE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002637 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002153 adhE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002057 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009930 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001709 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286844 adhE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005294 adhE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062590 adhE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001389 adhE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000601 adhE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002311 adhE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006852 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142560 adhE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005572 adhE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001252 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002032 adhE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005851 adhE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004217 adhE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004168 adhE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004713 adhE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006301 adhE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005243 adhE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005299 adhE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006241 adhE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001130 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001129 adhE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006489 adhE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008729 adhE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005966 adhE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007045 adhE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107730 adhE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083374 adhE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002115 adhE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095693 adhE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007590 adhE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005955 adhE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008703 adhE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003073 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265717 adhE CDS
Person Approved Go view Shigella boydii 227 ADV-0002030 adhE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006810 adhE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007015 adhE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001476 adhE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072381 adhE CDS
Person Approved Go view Shigella flexneri 301 ABT-0087579 adhE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001330 adhE CDS
Person Approved Go view Shigella sonnei 046 ADD-0002131 adhE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002108 VC2033 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004430 adhE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002687 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006573 adhE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003518 adhE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002389 adhE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002976 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239010 adhE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006278 adhE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001857 adhE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004674 adhE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001271 adhE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122435 adhE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005607 adhE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007742 adhE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003061 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007534 adhE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006048 adhE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031729 adhE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005799 adhE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001982 adhE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001142 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007184 adhE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005934 adhE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002187 adhE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002578 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002451 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014622 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003567 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20272mutantTn5 InsertionRequest the StrainABE-0004164adhEadhE::Tn5KAN-2 at position 1923 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1290446 to 1303121
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004147rssBCDSforward12902421291255Downstream
ABE-0004150galUCDSforward12914571292365Downstream
ABE-0004152hnsCDScomplement12925091292922Downstream
ABE-0004157tdkCDSforward12935271294144Downstream
ABE-0004159insZ_3CDSpcomplement12944261295016Downstream
ABE-0285106insZpseudogenecomplement12944261295322Downstream
ABE-0285141ISZmobile_elementcomplement12944261295405Downstream
ABE-0004161insZ_2CDSpcomplement12949681295198Downstream
ABE-0004164adhECDScomplement12954461298121Matches
ABE-0285806ychTCDSforward12985141298567Upstream
ABE-0004168ychECDSforward12985981299245Upstream
ABE-0285315is_elementcomplement12994991300693Upstream
ABE-0285437mobile_elementforward12994991300693Upstream
ABE-0285316insH21CDSforward12995671300547Upstream
ABE-0004172oppACDSforward13011821302813Upstream
ABE-0004174oppBCDSforward13028991303819Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.