Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004174 (oppB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004174 showshow history
Names
oppB stkB JW1236 ECK1238 b1244
Product
membrane component of an ABC superfamily oligopeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1302899 1303819 921 307
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000512
EnteroFam0004174: Trusted threshold=878.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name oppB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1238 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym stkB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1236 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1244 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily oligopeptide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name oligopeptide transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name oligopeptide transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name oligopeptide transport permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004174: Trusted threshold=878.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000512
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.34 (metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.148 (transport; substrate; oligopeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945823 Published Annotation - Entrez Gene Database ID: 945823
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AFH2 Published Annotation - Swiss-Prot Accession Number: P0AFH2 Jan 2006
Automated Process Approved db xref GI:1787497 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFH2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004174 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Protein, peptide secretion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0000270 - peptidoglycan metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74326.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000512 oppB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001092 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001057 oppB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001177 oppB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001403 oppB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001216 oppB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002815 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002071 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001883 oppB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001696 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002487 oppB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003146 oppB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006998 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020638 oppB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001932 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003062 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302024 oppB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002112 oppB1 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001645 oppB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003873 oppB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006111 oppB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001303 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009842 oppB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001190 oppB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003099 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008175 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005146 oppB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006837 opp B CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077822 oppB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001381 oppB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001696 oppB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008497 oppB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008615 oppB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001457 oppB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005834 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001441 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010442 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009477 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010680 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008900 oppB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006570 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009430 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010362 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010059 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010545 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010605 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009249 oppB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008048 oppB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025804 oppB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005904 oppB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006029 oppB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001833 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001167 oppB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001270 oppB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001515 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001613 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001490 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001518 oppB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175588 oppB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001321 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001895 oppB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131698 oppB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004327 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001446 oppB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001987 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002714 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002202 oppB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000312 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006692 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001461 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003582 oppB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001433 oppB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002642 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002150 oppB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002061 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009926 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001713 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290246 oppB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005289 oppb3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062587 oppB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001271 oppB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003889 oppB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000602 oppB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006857 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142547 oppB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005576 oppB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001257 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002029 oppB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005854 oppB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004230 oppB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004181 oppB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004716 oppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006298 oppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005239 oppB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005296 oppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004754 oppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005372 oppB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006238 oppB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004544 oppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001133 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001132 oppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001508 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006485 oppB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008732 oppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005963 oppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007042 oppB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107740 oppB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083371 oppB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002111 oppB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095677 oppB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007594 oppB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005952 oppB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008699 oppB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003077 CDS
Person Approved Go view Shigella boydii 227 ADV-0002024 oppB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006817 oppB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007011 oppB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001486 oppB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072387 oppB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087584 oppB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001333 oppB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002128 oppB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001160 VC1092 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004423 oppB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002691 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006557 oppB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003514 oppB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002385 oppB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002980 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239023 oppB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006275 oppB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001861 oppB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004677 oppB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001268 oppB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122454 oppB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005610 oppB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007739 oppB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007531 oppB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006045 oppB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031733 oppB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005795 oppB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001986 oppB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001138 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007181 oppB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005930 oppB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002190 oppB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002582 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002447 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014607 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003571 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1297899 to 1308819
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004164adhECDScomplement12954461298121Upstream
ABE-0285806ychTCDSforward12985141298567Upstream
ABE-0004168ychECDSforward12985981299245Upstream
ABE-0285315is_elementcomplement12994991300693Upstream
ABE-0285437mobile_elementforward12994991300693Upstream
ABE-0285316insH21CDSforward12995671300547Upstream
ABE-0004172oppACDSforward13011821302813Upstream
ABE-0004174oppBCDSforward13028991303819Matches
ABE-0004176oppCCDSforward13038341304742Downstream
ABE-0004178oppDCDSforward13047541305767Downstream
ABE-0004182oppFCDSforward13057641306768Downstream
ABE-0004184yciUCDScomplement13068211307150Downstream
ABE-0004186clsACDScomplement13071851308645Downstream
ABE-0285179yciYCDSforward13087881308961Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.