Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004176 (oppC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004176 showshow history
Names
oppC stkB JW1237 ECK1239 b1245
Product
membrane component of an ABC superfamily oligopeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1303834 1304742 909 303
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR025966 (IPR025966 Oligopeptide transport permease C-like, N-terminal domain) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF12911 (PF12911 N-terminal TM domain of oligopeptide transport permease C) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name oppC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1239 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1237 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym stkB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1245 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily oligopeptide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name homolog of Salmonella oligopeptide transport permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name oligopeptide transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name oligopeptide transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR025966 Oligopeptide transport permease C-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR025966
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12911 N-terminal TM domain of oligopeptide transport permease C Protein Sequence Similarity - PFAM Model Name: PF12911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.148 (transport; substrate; oligopeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.34 (metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFH6 Published Annotation - Swiss-Prot Accession Number: P0AFH6 Jan 2006
Automated Process Approved db xref GeneID:945810 Published Annotation - Entrez Gene Database ID: 945810
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787498 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFH6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004176 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10676 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note homolog of Salmonella oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0000270 - peptidoglycan metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74327.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001914 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001255 oppC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001285 oppC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000923 oppC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001526 oppC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002814 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002070 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001884 oppC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001697 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002486 oppC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003145 oppC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006997 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020637 oppC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001933 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003061 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302018 oppC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001646 oppC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003874 oppC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006112 oppC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001304 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009843 oppC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001191 oppC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003098 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008174 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005147 oppC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006836 oppC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077823 oppC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001382 oppC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001697 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008496 oppC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008616 oppC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001458 oppC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005835 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001442 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010443 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009478 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010681 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008901 oppC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006571 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009429 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010363 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010060 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010546 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010604 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009250 oppC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008049 oppC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025805 oppC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005905 oppC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006030 oppC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001832 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001168 oppC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001271 oppC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001514 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001612 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001491 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001519 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001322 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001894 oppC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131699 oppC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004326 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001447 oppC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001986 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002715 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002201 oppC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000311 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006691 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001460 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003583 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001432 oppC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002643 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002149 oppC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002062 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009925 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001714 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290245 oppC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005288 oppc3 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062586 oppC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001337 oppC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003888 oppC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000601 oppC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006858 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142544 oppC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005577 oppC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001258 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002028 oppC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005855 oppC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004235 oppC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004185 oppC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004717 oppC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006297 oppC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005238 oppC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005295 oppC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004753 oppC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005371 oppC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006237 oppC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004545 oppC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001134 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001133 oppC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001509 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006484 oppC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008733 oppC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005962 oppC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007041 oppC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002110 oppC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095674 oppC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007595 oppC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005951 oppC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008698 oppC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003078 CDS
Person Approved Go view Shigella boydii 227 ADV-0002023 oppC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006818 oppC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007010 oppC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001487 oppC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072388 oppC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087585 oppC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001334 oppC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002127 oppC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001161 VC1093 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004422 oppC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002692 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006553 oppC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003513 oppC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002384 oppC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002981 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239030 oppC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006274 oppC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001862 oppC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004678 oppC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001267 oppC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122464 oppC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005611 oppC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007738 oppC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002956 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007530 oppC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006044 oppC CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031734 oppC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005794 oppC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001987 oppC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001137 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007180 oppC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005929 oppC CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002191 oppC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002583 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002446 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014600 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003572 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1298834 to 1309742
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004168ychECDSforward12985981299245Upstream
ABE-0285315is_elementcomplement12994991300693Upstream
ABE-0285437mobile_elementforward12994991300693Upstream
ABE-0285316insH21CDSforward12995671300547Upstream
ABE-0004172oppACDSforward13011821302813Upstream
ABE-0004174oppBCDSforward13028991303819Upstream
ABE-0004176oppCCDSforward13038341304742Matches
ABE-0004178oppDCDSforward13047541305767Downstream
ABE-0004182oppFCDSforward13057641306768Downstream
ABE-0004184yciUCDScomplement13068211307150Downstream
ABE-0004186clsACDScomplement13071851308645Downstream
ABE-0285179yciYCDSforward13087881308961Downstream
ABE-0004189kchCDScomplement13090161310269Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.