Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004186 (clsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004186 showshow history
Names
clsA cls yciJ JW1241 ECK1243 nov b1249
Product
cardiolipin synthase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1307185 1308645 1461 487
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000516
EnteroFam0004186: Trusted threshold=1375.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001736 (IPR001736 Phospholipase D/Transphosphatidylase) Apr 2008
Automated Process Approved IPR027379 (IPR027379 Cardiolipin synthase N-terminal) Jul 2018
Automated Process Approved IPR025202 (IPR025202 Phospholipase D-like domain) Jul 2018
Automated Process Approved IPR022924 (IPR022924 Cardiolipin synthase) Jul 2018
Automated Process Approved PF13396 (PF13396 Phospholipase_D-nuclease N-terminal) Jul 2018
Automated Process Approved PF13091 (PF13091 PLD-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0032049 cardiolipin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008808 cardiolipin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name clsA Published Annotation - PubMed ID: 22988102
Reference: Escherichia coli K-12 		Oct 2018
Person Approved synonym nov Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1241 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym cls Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym yciJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1243 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1249 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cardiolipin synthase 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name cardiolipin synthase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004186: Trusted threshold=1375.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000516
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001736 Phospholipase D/Transphosphatidylase Protein Sequence Similarity - InterPro Domain: IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13396 Phospholipase_D-nuclease N-terminal Protein Sequence Similarity - PFAM Model Name: PF13396
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13091 PLD-like domain Protein Sequence Similarity - PFAM Model Name: PF13091
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022924 Cardiolipin synthase Protein Sequence Similarity - InterPro Domain: IPR022924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR025202 Phospholipase D-like domain Protein Sequence Similarity - InterPro Domain: IPR025202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027379 Cardiolipin synthase N-terminal Protein Sequence Similarity - InterPro Domain: IPR027379
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.8.- Published Annotation - Swiss-Prot Accession Number: P0A6H8 Feb 2006
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11608 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945821 Published Annotation - Entrez Gene Database ID: 945821
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0004186 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6H8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6H8 Published Annotation - Swiss-Prot Accession Number: P0A6H8 Jan 2006
Automated Process Approved db xref GI:1787502 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Macromolecule synthesis: Phospholipids Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74331.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0032049 cardiolipin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008808 cardiolipin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR022924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000516 clsA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001088 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000323 cls CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000241 clsA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000209 cls CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000528 clsA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002810 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002066 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129543 cls CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104979 cls CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104382 cls CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001889 cls CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001702 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002481 cls_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003140 cls CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006993 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015511 clsA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001937 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003056 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302002 cls CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002107 cls CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001650 cls CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003879 cls CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006116 cls CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001308 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009847 cls CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001195 cls CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003094 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008170 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005151 cls CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006832 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077827 cls CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001386 cls CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001702 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008492 cls CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008620 cls CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001462 cls CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005839 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001446 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010447 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009482 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010685 cls CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006575 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009425 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010367 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010064 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011088 cls CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010600 cls CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009254 cls CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008053 cls CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025809 cls CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005909 clsA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006034 cls CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001828 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001171 cls CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001275 cls CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001510 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001608 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001495 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001523 cls CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175595 cls CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001326 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001890 cls CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131703 cls CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004322 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001451 cls CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001982 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003085 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002196 cls CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000306 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006687 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001456 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003587 cls CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001428 cls CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002647 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002145 cls CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002066 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009921 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001718 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290241 cls CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005284 cls CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062582 cls CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001387 cls CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000599 cls CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000597 cls CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006862 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142537 cls CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005582 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001264 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002023 cls CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005860 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004253 cls CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004203 cls CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004722 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006292 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005233 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005290 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004748 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005366 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006232 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004550 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001139 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001138 cls CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001514 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008738 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005957 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007036 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107757 cls CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083365 cls CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002105 cls CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095660 cls CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007600 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005946 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008693 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003082 CDS
Person Approved Go view Shigella boydii 227 ADV-0002019 cls CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006822 cls CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007006 cls CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001491 cls CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072392 cls CDS
Person Approved Go view Shigella flexneri 301 ABT-0087589 cls CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001338 cls CDS
Person Approved Go view Shigella sonnei 046 ADD-0002123 cls CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001743 VC1670 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000541 cls CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004377 cls CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002696 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006539 cls CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003509 cls CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002380 cls CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002985 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239042 cls CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006269 cls CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001868 cls CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004683 cls CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001263 cls CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122483 cls CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005616 cls CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007733 cls CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007525 cls CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006039 cls CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031739 cls CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005789 cls CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001993 cls CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001131 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007176 cls CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005924 cls CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002195 cls CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002589 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002440 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014563 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003577 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20275mutantTn5 InsertionRequest the StrainABE-0004186clsAcls::Tn5KAN-2 at position 1184 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1302185 to 1313645
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004172oppACDSforward13011821302813Downstream
ABE-0004174oppBCDSforward13028991303819Downstream
ABE-0004176oppCCDSforward13038341304742Downstream
ABE-0004178oppDCDSforward13047541305767Downstream
ABE-0004182oppFCDSforward13057641306768Downstream
ABE-0004184yciUCDScomplement13068211307150Downstream
ABE-0004186clsACDScomplement13071851308645Matches
ABE-0285179yciYCDSforward13087881308961Upstream
ABE-0004189kchCDScomplement13090161310269Upstream
ABE-0004192yciICDScomplement13105691310865Upstream
ABE-0004196tonBCDSforward13110891311808Upstream
ABE-0004198yciACDScomplement13118481312246Upstream
ABE-0004200yciBCDScomplement13123511312890Upstream
ABE-0004204yciCCDScomplement13129201313663Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.