Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004196 (tonB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004196 showshow history
Names
tonB JW5195 ECK1246 T1rec exbA b1252
Product
transducer of proton motive force for active transport
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1311089 1311808 720 240
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000518
EnteroFam0004196: Trusted threshold=596.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003538 (IPR003538 Gram-negative bacterial TonB protein) Apr 2008
Automated Process Approved IPR006260 (IPR006260 TonB/TolA, C-terminal) Apr 2008
Automated Process Approved PF03544 (PF03544 Gram-negative bacterial TonB protein C-terminal) Jul 2018
Automated Process Approved PF16031 (PF16031 TonB polyproline region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006826 iron ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006260
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tonB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1246 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5195 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym T1rec Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym exbA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1252 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product transducer of proton motive force for active transport Experimental - PubMed ID: 9159515
Reference: Eschericia coli K-12 GM1 		Aug 2008
Person Approved alternate product name energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name membrane spanning protein in TonB-ExbB-ExbD transport complex Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name membrane spanning protein in TonB-ExbB-ExbD complex Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004196: Trusted threshold=596.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000518
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF03544 Gram-negative bacterial TonB protein C-terminal Protein Sequence Similarity - PFAM Model Name: PF03544
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006260 TonB/TolA, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003538 Gram-negative bacterial TonB protein Protein Sequence Similarity - InterPro Domain: IPR003538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF16031 TonB polyproline region Protein Sequence Similarity - PFAM Model Name: PF16031
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 8.1 (extrachromosomal; prophage genes and phage related functions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11012 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P02929 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004196 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787505 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945843 Published Annotation - Entrez Gene Database ID: 945843
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P02929 Published Annotation - Swiss-Prot Accession Number: P02929 Jan 2005
Person Approved function membrane; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74334.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006826 iron ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006260
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000518 tonB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001913 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002461 tonB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001994 tonB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000903 tonB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002154 tonB CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001707 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002478 tonB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003137 tonB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006988 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015515 tonB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001941 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003053 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301996 tonB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001653 tonB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003882 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006120 tonB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001312 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009850 tonB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001199 tonB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003091 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008166 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005166 tonB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006829 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077831 tonB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001390 tonB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001705 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008489 tonB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008683 tonB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001466 tonB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005852 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001449 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010451 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009485 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010688 tonB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006579 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010068 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011084 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010596 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009258 tonB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025812 tonB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005913 tonB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006037 tonB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001825 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001172 tonB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001278 tonB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001506 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001604 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001499 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001527 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175598 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001330 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001879 tonB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131706 tonB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004319 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001455 tonB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001978 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002192 tonB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000302 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006682 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001450 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003594 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001426 tonB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002651 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002141 tonB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002070 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009854 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001724 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005278 tonB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062579 tonB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001334 tonB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003885 tonB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000594 tonB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006867 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142531 tonB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005585 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001268 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002021 tonB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005863 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004260 tonB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004209 tonB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004725 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006289 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005230 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005287 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004745 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005363 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006229 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004553 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001141 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001140 tonB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001517 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006476 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008741 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005954 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007033 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107761 tonB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083363 tonB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002102 tonB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095649 tonB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007603 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005942 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008690 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003102 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268224 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002013 tonB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006825 tonB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008421 tonB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001502 tonB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072398 tonB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087594 tonB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001344 tonB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002101 tonB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004372 tonB CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006529 tonB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003505 tonB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002374 tonB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002990 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239050 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006260 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001875 tonB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004692 tonB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001258 tonB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122493 tonB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005624 tonB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007727 tonB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003871 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007518 tonB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006031 tonB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031743 tonB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005781 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002000 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001123 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007171 tonB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005917 tonB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002201 tonB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002598 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002430 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014556 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003581 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1306089 to 1316808
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004182oppFCDSforward13057641306768Upstream
ABE-0004184yciUCDScomplement13068211307150Upstream
ABE-0004186clsACDScomplement13071851308645Upstream
ABE-0285179yciYCDSforward13087881308961Upstream
ABE-0004189kchCDScomplement13090161310269Upstream
ABE-0004192yciICDScomplement13105691310865Upstream
ABE-0004196tonBCDSforward13110891311808Matches
ABE-0004198yciACDScomplement13118481312246Downstream
ABE-0004200yciBCDScomplement13123511312890Downstream
ABE-0004204yciCCDScomplement13129201313663Downstream
ABE-0004210ompWCDSforward13140201314658Downstream
ABE-0004212yciECDScomplement13147181315224Downstream
ABE-0004222yciFCDScomplement13152701315770Downstream
ABE-0004229yciGCDScomplement13158561316035Downstream
ABE-0004232trpACDScomplement13164161317222Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.