Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004232 (trpA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004232 showshow history
Names
trpA tryp try JW1252 ECK1254 b1260
Product
tryptophan synthase subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1316416 1317222 807 269
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000523
EnteroFam0004232: Trusted threshold=711.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002028 (IPR002028 Tryptophan synthase, alpha chain) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved PF00290 (PF00290 Tryptophan synthase alpha chain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006568 tryptophan metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002028
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004834 tryptophan synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002028
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name trpA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1252 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym tryp Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym try Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1254 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1260 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product tryptophan synthase subunit alpha Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name tryptophan synthase, alpha protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004232: Trusted threshold=711.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000523
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00290 Tryptophan synthase alpha chain Protein Sequence Similarity - PFAM Model Name: PF00290
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002028 Tryptophan synthase, alpha chain Protein Sequence Similarity - InterPro Domain: IPR002028
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.20 Published Annotation - Swiss-Prot Accession Number: P0A877 Feb 2006
Person Uncurated MultiFun 1.5.1.15 (metabolism; building block biosynthesis; amino acids; tryptophan) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11024 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787514 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A877 Published Annotation - Swiss-Prot Accession Number: P0A877 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A877 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946204 Published Annotation - Entrez Gene Database ID: 946204
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0004232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Tryptophan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tryptophan synthase, alpha protein; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000162 - tryptophan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74342.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006568 tryptophan metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002028
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004834 tryptophan synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002028
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000523 trpA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001082 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000262 trpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000566 trpA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000481 trpA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000654 trpA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002802 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002010 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129547 trpA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104983 trpA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104386 trpA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002266 trpA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001717 trpA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002466 trpA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003129 trpA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006977 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015527 trpA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001948 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002979 trpA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301975 trpA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002096 trpA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001659 trpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003888 trpA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006128 trpA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001320 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009858 trpA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001255 trpA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003035 trpA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008156 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005174 trpA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006821 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077839 trpA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001398 trpA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001713 trpA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008481 trpA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006070 trpA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001547 trpA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005900 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002457 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005270 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009636 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010270 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009253 trpA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006732 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007708 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011207 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010247 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010666 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009155 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009302 trpA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010323 trpA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026282 trpA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005921 trpA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006045 trpA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001817 trpA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001180 trpA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001286 trpA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001497 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001595 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001696 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001534 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175665 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001338 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001871 trpA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131796 trpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002312 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001535 trpA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001971 trpA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003074 trpA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001257 trpA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000294 trpA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006672 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001443 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003601 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001419 trpA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002658 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002134 trpA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002077 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009844 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001731 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290229 trpA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005271 trpA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062565 trpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001381 trpA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002878 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000588 trpA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006877 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142488 trpA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000160 trpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005595 trpA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001279 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002011 trpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005873 trpA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004284 trpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004232 trpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004735 trpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006279 trpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005220 trpA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005276 trpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004735 trpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005353 trpA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006219 trpA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004563 trpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001151 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001150 trpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001528 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006466 trpA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005148 trpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005943 trpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007022 trpA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107772 trpA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083353 trpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002092 trpA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095622 trpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007613 trpA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005931 trpA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008680 trpA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003110 trpA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266634 trpA CDS
Person Approved Go view Shigella boydii 227 ADV-0002005 trpA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006890 trpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008010 trpA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001518 trpA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072406 trpA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087602 trpA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001352 trpA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002065 trpA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001237 VC1169 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004347 trpA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003637 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006506 trpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003497 trpA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002705 trpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002348 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239073 trpA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006430 trpA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001891 trpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004702 trpA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001250 trpA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122534 trpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007154 trpA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007717 trpA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002495 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007508 trpA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006021 trpA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031754 trpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005771 trpA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002016 trpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001108 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007161 trpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005908 trpA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002209 trpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002610 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002419 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012548 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004088 trpA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20276mutantTn5 InsertionRequest the StrainABE-0004232trpAtrpA::Tn5KAN-2 at position 549 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1311416 to 1322222
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004196tonBCDSforward13110891311808Downstream
ABE-0004198yciACDScomplement13118481312246Downstream
ABE-0004200yciBCDScomplement13123511312890Downstream
ABE-0004204yciCCDScomplement13129201313663Downstream
ABE-0004210ompWCDSforward13140201314658Downstream
ABE-0004212yciECDScomplement13147181315224Downstream
ABE-0004222yciFCDScomplement13152701315770Downstream
ABE-0004229yciGCDScomplement13158561316035Downstream
ABE-0004232trpACDScomplement13164161317222Matches
ABE-0004234trpBCDScomplement13172221318415Overlaps Upstream
ABE-0004238trpCCDScomplement13184271319785Upstream
ABE-0004241trpDCDScomplement13197891321384Upstream
ABE-0004244trpECDScomplement13213841322946Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.