Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004234 (trpB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004234 showshow history
Names
trpB JW1253 ECK1255 b1261
Product
tryptophan synthase subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1317222 1318415 1194 398
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000524
EnteroFam0004234: Trusted threshold=1190.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006654 (IPR006654 Tryptophan synthase, beta chain) Apr 2008
Automated Process Approved IPR001926 (IPR001926 Pyridoxal-phosphate dependent enzyme) Apr 2008
Automated Process Approved IPR006653 (IPR006653 Tryptophan synthase, beta chain, conserved site) Apr 2008
Automated Process Approved IPR036052 (IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme) Jul 2018
Automated Process Approved PF00291 (PF00291 Pyridoxal-phosphate dependent enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006568 tryptophan metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006654
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004834 tryptophan synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006654
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name trpB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1253 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1255 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1261 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product tryptophan synthase subunit beta Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name tryptophan synthase, beta protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004234: Trusted threshold=1190.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000524
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006654 Tryptophan synthase, beta chain Protein Sequence Similarity - InterPro Domain: IPR006654
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00291 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - PFAM Model Name: PF00291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR036052
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006653 Tryptophan synthase, beta chain, conserved site Protein Sequence Similarity - InterPro Domain: IPR006653
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001926 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.20 Published Annotation - Swiss-Prot Accession Number: P0A879 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.15 (metabolism; building block biosynthesis; amino acids; tryptophan) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787515 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A879 Published Annotation - Swiss-Prot Accession Number: P0A879 Jan 2006
Automated Process Approved db xref ASAP:ABE-0004234 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A879 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11025 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945768 Published Annotation - Entrez Gene Database ID: 945768
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Amino acid biosynthesis: Tryptophan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tryptophan synthase, beta protein; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000162 - tryptophan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74343.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006568 tryptophan metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006654
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004834 tryptophan synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006654
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000524 trpB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001081 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000297 trpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000309 trpB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000164 trpB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000307 trpB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002801 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002009 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129548 trpB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104984 trpB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104387 trpB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002265 trpB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001718 trpB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002465 trpB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003128 trpB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006976 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015528 trpB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001949 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002978 trpB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301972 trpB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002095 trpB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001660 trpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003889 trpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006129 trpB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001321 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009859 trpB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001256 trpB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003034 trpB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008155 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005175 trpB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006820 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077840 trpB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001399 trpB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001714 trpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008480 trpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006071 trpB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001548 trpB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005901 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002458 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005271 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009637 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010271 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009254 trpB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006733 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007709 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011208 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010248 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010667 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009154 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009303 trpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010324 trpB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026281 trpB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005922 trpB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006046 trpB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001816 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001181 trpB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001287 trpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001496 trpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001594 trpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001695 trpB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001535 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001339 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001870 trpB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131797 trpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002311 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001536 trpB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001970 trpB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003073 trpB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001258 trpB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000293 trpB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006671 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001442 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003602 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001418 trpB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002659 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002133 trpB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002078 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009843 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001732 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290228 trpB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005270 trpB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062564 trpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001365 trpB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000593 trpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000587 trpB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006878 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142486 trpB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000159 trpB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005596 trpB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001280 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002010 trpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005874 trpB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004287 trpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004235 trpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004736 trpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006278 trpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005219 trpB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005275 trpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004734 trpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005352 trpB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006218 trpB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004564 trpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001152 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001151 trpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001529 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006465 trpB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005149 trpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005942 trpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007021 trpB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107775 trpB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083352 trpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002091 trpB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095619 trpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007614 trpB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005930 trpB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008679 trpB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003111 trpB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266633 trpB CDS
Person Approved Go view Shigella boydii 227 ADV-0002004 trpB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006891 trpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008009 trpB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001519 trpB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072407 trpB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087603 trpB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001353 trpB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002064 trpB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001238 VC1170 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004346 trpB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003638 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006502 trpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003496 trpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002706 trpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002349 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239074 trpB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001892 trpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004703 trpB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001249 trpB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122537 trpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007153 trpB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007716 trpB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002496 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007507 trpB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006020 trpB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031755 trpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005770 trpB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002017 trpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001107 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007160 trpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005907 trpB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002210 trpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002611 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002418 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012555 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004087 trpB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20277mutantTn5 InsertionRequest the StrainABE-0004234trpBtrpB::Tn5KAN-2 at position 776 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1312222 to 1323415
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004198yciACDScomplement13118481312246Downstream
ABE-0004200yciBCDScomplement13123511312890Downstream
ABE-0004204yciCCDScomplement13129201313663Downstream
ABE-0004210ompWCDSforward13140201314658Downstream
ABE-0004212yciECDScomplement13147181315224Downstream
ABE-0004222yciFCDScomplement13152701315770Downstream
ABE-0004229yciGCDScomplement13158561316035Downstream
ABE-0004232trpACDScomplement13164161317222Overlaps Downstream
ABE-0004234trpBCDScomplement13172221318415Matches
ABE-0004238trpCCDScomplement13184271319785Upstream
ABE-0004241trpDCDScomplement13197891321384Upstream
ABE-0004244trpECDScomplement13213841322946Upstream
ABE-0285716matS4protein_bindforward13227411322753Upstream
ABE-0004246trpLCDScomplement13230381323082Upstream
ABE-0004252yciVCDSforward13232201324101Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.