Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004241 (trpD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004241 showshow history
Names
trpD trpGD JW1255 ECK1257 b1263
Product
anthranilate synthase glutamine amidotransferase/anthranilate phosphoribosyl transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1319789 1321384 1596 532
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Uncurated ADX-0000526
EnteroFam0004241: Trusted threshold=894.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006220 (IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin) Apr 2008
Automated Process Approved IPR011702 (IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily) Apr 2008
Automated Process Approved IPR001317 (IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain) Apr 2008
Automated Process Approved IPR006221 (IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain) Apr 2008
Automated Process Approved IPR005940 (IPR005940 Anthranilate phosphoribosyl transferase) Apr 2008
Automated Process Approved IPR000312 (IPR000312 Glycosyl transferase, family 3) Apr 2008
Automated Process Approved IPR000991 (IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal) Apr 2008
Automated Process Approved IPR012998 (IPR012998 (DEPRECATED) Glutamine amidotransferase, class I, active site) Apr 2008
Automated Process Approved IPR017459 (IPR017459 Glycosyl transferase family 3, N-terminal domain) Jul 2018
Automated Process Approved IPR017926 (IPR017926 Glutamine amidotransferase) Jul 2018
Automated Process Approved IPR036320 (IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily) Jul 2018
Automated Process Approved IPR035902 (IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily) Jul 2018
Automated Process Approved IPR029062 (IPR029062 Class I glutamine amidotransferase-like) Jul 2018
Automated Process Approved PF02885 (PF02885 Glycosyl transferase family, helical bundle domain) Jul 2018
Automated Process Approved PF00117 (PF00117 Glutamine amidotransferase class-I) Jul 2018
Automated Process Approved PF00591 (PF00591 Glycosyl transferase family, a/b domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0000162 tryptophan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005940
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004048 anthranilate phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005940
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004049 anthranilate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trpD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1257 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1255 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym trpGD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1263 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product anthranilate synthase glutamine amidotransferase/anthranilate phosphoribosyl transferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name bifunctional anthranilate synthase component II: glutamine amidotransferase (N-terminal); phosphoribosyl transferase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004241: Trusted threshold=894.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000526
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005940 Anthranilate phosphoribosyl transferase Protein Sequence Similarity - InterPro Domain: IPR005940
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain Protein Sequence Similarity - InterPro Domain: IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin Protein Sequence Similarity - InterPro Domain: IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029062 Class I glutamine amidotransferase-like Protein Sequence Similarity - InterPro Domain: IPR029062
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily Protein Sequence Similarity - InterPro Domain: IPR011702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain Protein Sequence Similarity - InterPro Domain: IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000312 Glycosyl transferase, family 3 Protein Sequence Similarity - InterPro Domain: IPR000312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017926 Glutamine amidotransferase Protein Sequence Similarity - InterPro Domain: IPR017926
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036320
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR035902
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00591 Glycosyl transferase family, a/b domain Protein Sequence Similarity - PFAM Model Name: PF00591
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017459 Glycosyl transferase family 3, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR017459
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012998 (DEPRECATED) Glutamine amidotransferase, class I, active site Protein Sequence Similarity - InterPro Domain: IPR012998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02885 Glycosyl transferase family, helical bundle domain Protein Sequence Similarity - PFAM Model Name: PF02885
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00117 Glutamine amidotransferase class-I Protein Sequence Similarity - PFAM Model Name: PF00117
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.4.-.- Published Annotation - Database Name: EC2GO: GO:0016757
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.4.2.18 Published Annotation - Swiss-Prot Accession Number: P00904 Feb 2006
Person Approved EC number 4.1.3.27 Published Annotation - Swiss-Prot Accession Number: P00904 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.15 (metabolism; building block biosynthesis; amino acids; tryptophan) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787517 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11027 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945109 Published Annotation - Entrez Gene Database ID: 945109
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00904 Published Annotation - Swiss-Prot Accession Number: P00904 Jan 2005
Automated Process Approved db xref ASAP:ABE-0004241 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00904 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Tryptophan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000162 - tryptophan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74345.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0000162 tryptophan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005940
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000312
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004048 anthranilate phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005940
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004049 anthranilate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001079 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001011 trpD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000775 trpD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000569 trpD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000492 trpD CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129550 trpD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104986 trpD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104389 trpD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002263 trpD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001720 trpD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002463 trpD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003126 trpD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006974 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015530 trpD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001951 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002976 trpD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301965 trpD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001662 trpD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003891 trpD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006131 trpD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001323 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009861 trpD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001258 trpD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003032 trpD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008153 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005177 trpD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006818 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077843 trpD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001401 trpD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001716 trpD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008478 trpD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006073 trpD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001550 trpD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005903 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002460 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005273 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009639 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010273 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009256 trpD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006735 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007711 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011210 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010250 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010669 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009152 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009305 trpD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010326 trpD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026279 trpD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005924 trpGD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006048 trpD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001814 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001183 trpD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001289 trpD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001494 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001592 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001693 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001537 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001341 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001868 trpD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131799 trpD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002309 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001538 trpD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001260 trpD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000291 trpD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006669 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002131 trpD CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062562 trpD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001394 trpD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000591 trpD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000585 trpD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006880 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142483 trpD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000597 trpD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005598 trpD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001282 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002008 trpD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005876 trpD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004294 trpD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004242 trpD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004738 trpD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006276 trpD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005217 trpD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005273 trpD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004732 trpD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005350 trpD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006216 trpD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004566 trpD CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001153 trpD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001531 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006463 trpD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005151 trpD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005940 trpD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007019 trpD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107781 trpD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083350 trpD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002089 trpD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095611 trpD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007616 trpD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005928 trpD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008677 trpD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266631 trpD CDS
Person Approved Go view Shigella boydii 227 ADV-0002002 trpD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006893 trpD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008007 trpD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001521 trpD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072409 trpD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087605 trpD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001355 trpD CDS
Person Approved Go view Shigella sonnei 046 ADD-0002062 trpD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001240 VC1172 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004344 trpD CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006493 trpD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003494 trpD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002708 trpD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002351 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239076 trpD1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001894 trpD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001247 trpD CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122545 trpD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002498 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0247596 trpD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002019 trpD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001105 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005905 trpD CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002212 trpD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002613 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002416 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012570 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004085 trpD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1314789 to 1326384
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004212yciECDScomplement13147181315224Downstream
ABE-0004222yciFCDScomplement13152701315770Downstream
ABE-0004229yciGCDScomplement13158561316035Downstream
ABE-0004232trpACDScomplement13164161317222Downstream
ABE-0004234trpBCDScomplement13172221318415Downstream
ABE-0004238trpCCDScomplement13184271319785Downstream
ABE-0004241trpDCDScomplement13197891321384Matches
ABE-0004244trpECDScomplement13213841322946Overlaps Upstream
ABE-0285716matS4protein_bindforward13227411322753Upstream
ABE-0004246trpLCDScomplement13230381323082Upstream
ABE-0004252yciVCDSforward13232201324101Upstream
ABE-0004254yciOCDSforward13240981324718Upstream
ABE-0004256yciQCDSforward13247461326641Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.