Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004285 (ribA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004285 showshow history
Names
ribA JW1269 ECK1272 b1277
Product
GTP cyclohydrolase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1338570 1339160 591 197
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000538
EnteroFam0004285: Trusted threshold=574.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000926 (IPR000926 GTP cyclohydrolase II, RibA) Apr 2008
Automated Process Approved IPR032677 (IPR032677 GTP cyclohydrolase II) Jul 2018
Automated Process Approved IPR036144 (IPR036144 GTP cyclohydrolase II superfamily) Jul 2018
Automated Process Approved PF00925 (PF00925 GTP cyclohydrolase II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003935 GTP cyclohydrolase II activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ribA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1272 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1269 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1277 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product GTP cyclohydrolase II Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name GTP cyclohydrolase II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004285: Trusted threshold=574.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000538
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000926 GTP cyclohydrolase II, RibA Protein Sequence Similarity - InterPro Domain: IPR000926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR032677 GTP cyclohydrolase II Protein Sequence Similarity - InterPro Domain: IPR032677
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036144 GTP cyclohydrolase II superfamily Protein Sequence Similarity - InterPro Domain: IPR036144
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00925 GTP cyclohydrolase II Protein Sequence Similarity - PFAM Model Name: PF00925
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.4.25 Published Annotation - Swiss-Prot Accession Number: P0A7I7 Feb 2006
Person Uncurated MultiFun 1.5.3.9 (metabolism; building block biosynthesis; cofactor, small molecule carrier; riboflavin (Vitamin B2), FAD, FMN) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7I7 Published Annotation - Swiss-Prot Accession Number: P0A7I7 Jan 2006
Automated Process Approved db xref ASAP:ABE-0004285 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787533 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945763 Published Annotation - Entrez Gene Database ID: 945763
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7I7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11331 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Riboflavin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC74359.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003935 GTP cyclohydrolase II activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000538 ribA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000411 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000391 ribA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000312 ribA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000360 ribA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000319 ribA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001398 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003075 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129541 ribA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104978 ribA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104381 ribA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002248 ribA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001735 ribA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002448 ribA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003105 ribA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006459 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020612 ribA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002400 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002961 ribA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301918 ribA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002080 ribA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001677 ribA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003908 ribA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006147 ribA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001342 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009877 ribA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001271 ribA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003016 ribA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008137 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005193 ribA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006803 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077862 ribA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001416 ribA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001730 ribA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008462 ribA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006089 ribA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001566 ribA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005919 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002256 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005290 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009655 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010546 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010941 ribA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006751 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007727 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011226 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007896 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008720 ribA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026262 ribA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005942 ribA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006064 ribA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001798 ribA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001195 ribA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001306 ribA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001476 ribA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001574 ribA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001674 ribA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001554 ribA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175687 ribA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001356 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001851 ribA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131814 ribA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002293 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001554 ribA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001946 ribA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003231 ribA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001277 ribA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000273 ribA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006384 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001423 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003621 ribA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001402 ribA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002680 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002116 ribA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002096 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009826 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001749 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290204 ribA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005253 ribA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062204 ribA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001097 ribA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001701 ribA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002770 ribA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007326 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142402 ribA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000709 ribA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005614 ribA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001303 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001993 ribA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005891 ribA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004343 ribA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004289 ribA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004754 ribA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006260 ribA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005200 ribA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004716 ribA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005334 ribA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006200 ribA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004582 ribA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001167 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001165 ribA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001551 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006447 ribA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005166 ribA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005924 ribA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007003 ribA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107817 ribA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083338 ribA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002071 ribA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095569 ribA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007632 ribA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005912 ribA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007886 ribA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003131 ribA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266436 ribA CDS
Person Approved Go view Shigella boydii 227 ADV-0001985 ribA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006911 ribA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001546 ribA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072422 ribA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087619 ribA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001368 ribA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002044 ribA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001335 VC1263 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000538 ribA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004301 ribA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003220 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005763 ribA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003669 ribA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002723 ribA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002369 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239093 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006344 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001909 ribA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004720 ribA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001230 ribA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122599 ribA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007136 ribA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007698 ribA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001124 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007490 ribA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006003 ribA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031771 ribA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005753 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002034 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001090 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007139 ribA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005890 ribA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002228 ribA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002628 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002401 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012694 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004064 ribA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1333570 to 1344160
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004275topACDSforward13310481333645Downstream
ABE-0004279cysBCDSforward13338551334829Downstream
ABE-0285043ymiACDSforward13351601335288Downstream
ABE-0285044yciXCDSforward13352911335458Downstream
ABE-0285786ymiCCDSforward13355721335667Downstream
ABE-0004283acnACDSforward13358311338506Downstream
ABE-0004285ribACDScomplement13385701339160Matches
ABE-0004294pgpBCDSforward13393301340094Upstream
ABE-0004298lapACDSforward13402431340551Upstream
ABE-0004300lapBCDSforward13405581341727Upstream
ABE-0004304pyrFCDSforward13419211342658Upstream
ABE-0285717matS5protein_bindforward13423471342359Upstream
ABE-0004307yciHCDSforward13426581342984Upstream
ABE-0004309osmBCDScomplement13431101343328Upstream
ABE-0004312yciTCDScomplement13435971344346Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.