Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004304 (pyrF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004304 showshow history
Names
pyrF JW1273 ECK1276 b1281
Product
orotidine-5'-phosphate decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1341921 1342658 738 246
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000542
EnteroFam0004304: Trusted threshold=636.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR014732 (IPR014732 Orotidine 5'-phosphate decarboxylase) Apr 2008
Automated Process Approved IPR001754 (IPR001754 Orotidine 5'-phosphate decarboxylase domain) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved PF00215 (PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0044205 'de novo' UMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014732
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004590 orotidine-5'-phosphate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pyrF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1276 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1273 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1281 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product orotidine-5'-phosphate decarboxylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name orotidine-5'-phosphate decarboxylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004304: Trusted threshold=636.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000542
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR014732 Orotidine 5'-phosphate decarboxylase Protein Sequence Similarity - InterPro Domain: IPR014732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Protein Sequence Similarity - PFAM Model Name: PF00215
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001754 Orotidine 5'-phosphate decarboxylase domain Protein Sequence Similarity - InterPro Domain: IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.1.23 Published Annotation - Swiss-Prot Accession Number: P08244 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.2 (metabolism; building block biosynthesis; nucleotide; pyrimidine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787537 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947121 Published Annotation - Entrez Gene Database ID: 947121
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0004304 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08244 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10809 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08244 Published Annotation - Swiss-Prot Accession Number: P08244 Jan 2005
Person Approved function enzyme; Pyrimidine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74363.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0044205 'de novo' UMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014732
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004590 orotidine-5'-phosphate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000542 pyrF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000415 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000472 pyrF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000505 pyrF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000359 pyrF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000651 pyrF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001403 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003088 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129540 pyrF CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104977 pyrF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104380 pyrF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002244 pyrF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001739 pyrF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002444 pyrF CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003101 pyrF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006464 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020609 pyrF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002396 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002957 pyrF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301905 pyrF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002076 pyrF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001681 pyrF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003913 pyrF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006152 pyrF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001346 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009882 pyrF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001275 pyrF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003011 pyrF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008131 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005198 pyrF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005253 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077866 pyrF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001421 pyrF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001736 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008457 pyrF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006094 pyrF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001570 pyrF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005924 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002251 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005295 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009660 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010551 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007219 pyrF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006756 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007732 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011231 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007901 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008786 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008300 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007309 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008715 pyrF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026258 pyrF CDS
Person Approved Go view Escherichia coli F11 (UPEC) ADQ-0005947 pyrF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006069 pyrF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001794 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001199 pyrF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001310 pyrF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001472 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001570 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001670 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001558 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175691 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001361 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001846 pyrF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131818 pyrF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002288 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001558 pyrF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001941 pyrF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003227 pyrF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001281 pyrF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000267 pyrF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006390 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001419 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003625 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001398 pyrF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002684 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002112 pyrF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002100 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009822 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001753 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290200 pyrF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005249 pyrF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062217 pyrF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001072 pyrF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001704 pyrF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002784 pyrF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007319 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142393 pyrF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002066 pyrF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005618 pyrF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001308 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001989 pyrF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005896 pyrF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004356 pyrF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004302 pyrF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004758 pyrF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006255 pyrF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005196 pyrF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005253 pyrF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004712 pyrF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005330 pyrF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006196 pyrF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004586 pyrF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001171 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001169 pyrF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001555 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006443 pyrF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005170 pyrF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005920 pyrF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107825 pyrF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083334 pyrF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002066 pyrF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095555 pyrF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007636 pyrF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005907 pyrF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003137 pyrF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265985 pyrF CDS
Person Approved Go view Shigella boydii 227 ADV-0001981 pyrF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006916 pyrF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006542 pyrF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001550 pyrF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072427 pyrF CDS
Person Approved Go view Shigella flexneri 301 ABT-0087623 pyrF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001372 pyrF CDS
Person Approved Go view Shigella sonnei 046 ADD-0002040 pyrF CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0000776 pyrF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001985 VC1911 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000537 pyrF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004293 pyrF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003226 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005785 pyrF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003663 pyrF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002729 pyrF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003361 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239106 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006349 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001916 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004725 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001225 pyrF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122618 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007130 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007693 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001128 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007485 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005998 pyrF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031776 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005748 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002041 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001084 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007134 pyrF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005884 pyrF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002233 pyrF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002634 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002395 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012713 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004059 pyrF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20282mutantTn5 InsertionRequest the StrainABE-0004304pyrFpyrF::Tn5KAN-2 at position 237 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1336921 to 1347658
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004283acnACDSforward13358311338506Upstream
ABE-0004285ribACDScomplement13385701339160Upstream
ABE-0004294pgpBCDSforward13393301340094Upstream
ABE-0004298lapACDSforward13402431340551Upstream
ABE-0004300lapBCDSforward13405581341727Upstream
ABE-0004304pyrFCDSforward13419211342658Matches
ABE-0285717matS5protein_bindforward13423471342359Contained Within
ABE-0004307yciHCDSforward13426581342984Overlaps Downstream
ABE-0004309osmBCDScomplement13431101343328Downstream
ABE-0004312yciTCDScomplement13435971344346Downstream
ABE-0285180yciZCDScomplement13444361344609Downstream
ABE-0285752ymiDCDSforward13446471344775Downstream
ABE-0004317pdeRCDScomplement13447571346742Downstream
ABE-0285216ymiBCDSforward13467961346900Downstream
ABE-0004320rnbCDScomplement13469781348912Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.