Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004342 (sapD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004342 showshow history
Names
sapD JW1284 ECK1286 trkE b1291
Product
ATP-binding component of an ABC superfamily putrescine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1352636 1353628 993 331
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000547
EnteroFam0004342: Trusted threshold=968.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR010066 (IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal) Apr 2008
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF08352 (PF08352 Oligopeptide/dipeptide transporter, C-terminal region) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sapD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym trkE Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1284 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1286 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1291 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily putrescine transporter Experimental - PubMed ID: 27803167
Reference: Escherichia coli K-12 		Sep 2021
Person Approved alternate product name predicted antimicrobial peptide transporter subunit -!- ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name peptide transport system ATP-binding protein Experimental - PubMed ID: 9634580 Sep 2007
Automated Process Approved alternate product name antimicrobial peptide transport ABC system ATP-binding protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name peptide transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004342: Trusted threshold=968.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000547
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08352 Oligopeptide/dipeptide transporter, C-terminal region Protein Sequence Similarity - PFAM Model Name: PF08352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.152 (transport; substrate; peptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946203 Published Annotation - Entrez Gene Database ID: 946203
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AAH4 Published Annotation - Swiss-Prot Accession Number: P0AAH4 Jan 2006
Automated Process Approved db xref GI:1787548 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAH4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004342 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12304 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ATP-binding protein of peptide transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74373.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 8.02
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000547 sapD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000419 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000972 sapD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000834 sapD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000829 sapD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001136 sapD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001420 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003105 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002226 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001756 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002434 sapD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003090 sapD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006479 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019262 sapD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002376 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002937 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301861 sapD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002049 sapD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001693 sapD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004113 sapD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006163 sapD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001361 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009898 sapD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001288 sapD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002995 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008119 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005209 sapD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005242 SapD CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077884 sapD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001432 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001747 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005449 sapD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006105 sapD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001589 sapD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005938 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002231 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005311 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009676 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010568 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007204 sapD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006772 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007747 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011247 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007917 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008802 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008285 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007324 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008699 sapD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026238 sapD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005962 sapD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006081 sapD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001778 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001209 sapD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001320 sapD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001460 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001558 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001658 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001577 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175707 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001372 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001830 sapD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131832 sapD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002270 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001574 sapD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002012 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002740 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001292 sapD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000256 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006405 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001400 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003645 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001383 sapD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002701 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002097 sapD CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002126 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009806 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001773 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290184 sapD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005231 sapD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062234 sapD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001139 sapD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003487 sapD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003578 sapD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007297 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142780 sapD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005631 sapD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001321 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001975 sapD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005909 sapD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004386 sapD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004330 sapD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004772 sapD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006243 sapD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005184 sapD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005240 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004697 sapD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005317 sapD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006184 sapD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004599 sapD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001182 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001181 sapD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001574 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006431 sapD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005182 sapD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005908 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005244 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107851 sapD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083323 sapD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002047 sapD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095520 sapD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007649 sapD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005894 sapD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007870 sapD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003161 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265371 sapD CDS
Person Approved Go view Shigella boydii 227 ADV-0001968 sapD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006933 sapD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006526 sapD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001576 sapD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072439 sapD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087633 sapD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001383 sapD CDS
Person Approved Go view Shigella sonnei 046 ADD-0002030 sapD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001756 VC1683 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004689 sapD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000522 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006245 sapD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000941 sapD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000714 sapD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002029 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239422 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006657 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002064 sapD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004848 sapD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001102 sapD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123092 sapD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007009 sapD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006706 sapD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002266 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007908 sapD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006100 sapD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031676 sapD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008097 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002192 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000931 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007010 sapD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005751 sapD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002359 sapD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002802 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002228 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012773 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004046 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22805mutantTn5 InsertionRequest the StrainABE-0004342sapDsapD::Tn5(KAN-2) at position 886 in Plus orientation ,- pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1347636 to 1358628
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004320rnbCDScomplement13469781348912Downstream
ABE-0004322yciWCDScomplement13489801350107Downstream
ABE-0004327fabICDScomplement13502511351039Downstream
ABE-0004333ycjDCDScomplement13514071351760Downstream
ABE-0004339sapFCDScomplement13518281352634Downstream
ABE-0004342sapDCDScomplement13526361353628Matches
ABE-0004348sapCCDScomplement13536281354518Overlaps Upstream
ABE-0004350sapBCDScomplement13545051355470Upstream
ABE-0004354sapACDScomplement13554671357110Upstream
ABE-0285439repeat_regionforward13573591357392Upstream
ABE-0004359ymjACDScomplement13574231357668Upstream
ABE-0285440repeat_regionforward13577701357799Upstream
ABE-0004362puuPCDScomplement13578021359187Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.