Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004376 (puuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004376 showshow history
Names
puuC aldH JW1293 ECK1295 b1300
Product
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1362743 1364230 1488 496
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012303 (IPR012303 (DEPRECATED) NAD-dependent aldehyde dehydrogenase) Apr 2008
Automated Process Approved IPR015590 (IPR015590 Aldehyde dehydrogenase domain) Apr 2008
Automated Process Approved IPR016161 (IPR016161 Aldehyde/histidinol dehydrogenase) Jul 2018
Automated Process Approved PF00171 (PF00171 Aldehyde dehydrogenase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name puuC Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym aldH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW1293 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1295 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1300 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase Published Annotation - EcoCyc Accession Number: EG10036
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name aldehyde dehydrogenase, prefers NADP over NAD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR015590 Aldehyde dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR015590
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00171 Aldehyde dehydrogenase family Protein Sequence Similarity - PFAM Model Name: PF00171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012303 (DEPRECATED) NAD-dependent aldehyde dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR012303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016161 Aldehyde/histidinol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.1.- Published Annotation - Swiss-Prot Accession Number: P23883 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23883 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P23883 Published Annotation - Swiss-Prot Accession Number: P23883 Jan 2005
Automated Process Approved db xref EcoGene:EG10036 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004376 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787558 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947003 Published Annotation - Entrez Gene Database ID: 947003
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Fermentation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note aldehyde dehydrogenase, prefers NADP over NAD; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006113 - fermentation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74382.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005717 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003771 puuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003459 puuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002577 puuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003483 puuC CDS
Ortholog
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001589 puuC CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002495 puuC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004096 puuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006172 puuC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009907 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008108 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005218 puuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005233 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001444 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001757 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005438 puuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006114 puuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005950 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000939 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005321 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009686 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009350 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007194 puuC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006782 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007757 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011257 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007927 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008811 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008275 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007334 puuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008689 puuC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026229 puuC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006091 puuC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001217 puuC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001329 puuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001450 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001548 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001647 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001381 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001821 puuC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131841 puuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002261 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002121 puuC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001022 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000093 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003727 puuC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267132 CDS
Person Approved Go view Shigella boydii 227 ADV-0001959 aldH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006942 puuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006516 puuC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072449 aldH CDS
Person Approved Go view Shigella flexneri 301 ABT-0087642 aldH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001392 aldH CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0002021 aldH CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016153 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003194 puuC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1357743 to 1369230
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285440repeat_regionforward13577701357799Upstream
ABE-0004362puuPCDScomplement13578021359187Upstream
ABE-0285746ymjECDScomplement13591771359341Upstream
ABE-0004365puuACDScomplement13594901360908Upstream
ABE-0004369puuDCDSforward13611201361884Upstream
ABE-0004371puuRCDSforward13619111362468Upstream
ABE-0004376puuCCDSforward13627431364230Matches
ABE-0004378puuBCDSforward13642321365512Downstream
ABE-0004380puuECDSforward13655501366815Downstream
ABE-0285441repeat_regionforward13668331366913Downstream
ABE-0004383pspFCDScomplement13669351367912Downstream
ABE-0004387pspACDSforward13680791368747Downstream
ABE-0004389pspBCDSforward13688011369025Downstream
ABE-0004391pspCCDSforward13690251369384Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.