Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004380 (puuE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004380 showshow history
Names
puuE goaG JW1295 ECK1297 b1302
Product
4-aminobutyrate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1365550 1366815 1266 422
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004632 (IPR004632 4-aminobutyrate aminotransferase, bacterial) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Apr 2008
Automated Process Approved PF00202 (PF00202 Aminotransferase class-III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009448 gamma-aminobutyric acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004632
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003867 4-aminobutyrate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004632
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name puuE Published Annotation - PubMed ID: 15590624
Reference: Escherichia coli K-12 		Nov 2018
Person Approved synonym ECK1297 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1295 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym goaG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b1302 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 4-aminobutyrate aminotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name 4-aminobutyrate aminotransferase, PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name GABA aminotransferase, PLP-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00202 Aminotransferase class-III Protein Sequence Similarity - PFAM Model Name: PF00202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004632 4-aminobutyrate aminotransferase, bacterial Protein Sequence Similarity - InterPro Domain: IPR004632
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.6.1.- Published Annotation - Database Name: EC2GO: GO:0008483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.6.1.19 Published Annotation - Swiss-Prot Accession Number: P50457 Feb 2006
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004380 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P50457 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13187 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P50457 Published Annotation - Swiss-Prot Accession Number: P50457 Jan 2005
Automated Process Approved db xref GeneID:945446 Published Annotation - Entrez Gene Database ID: 945446
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787560 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 4-aminobutyrate aminotransferase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009310 - amine catabolic process; GO_process: GO:0008615 - pyridoxine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74384.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009448 gamma-aminobutyric acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004632
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003867 4-aminobutyrate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004632
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000130 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000064 puuE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000086 puuE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002208 puuE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003040 puuE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002629 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003338 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002412 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004412 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006617 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020782 puuE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002237 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002493 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303309 goaG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002584 goaG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001242 goaG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004094 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006174 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009909 gabT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008106 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005220 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005231 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0082066 puuE pseudogene
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001446 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001759 gabT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005436 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006116 gabT1 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005952 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000941 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005323 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009688 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009352 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007192 gabT1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006784 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007759 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011259 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007929 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008813 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008273 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007336 gabT1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008687 gabT1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026227 puuE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006093 gabT1 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001219 puuE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001331 puuE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001448 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001546 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001645 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001383 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001819 gabT1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131843 puuE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002259 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003873 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006489 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0004159 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000847 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001969 puuE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002047 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002721 puuE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001426 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010483 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002200 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0285885 puuE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008380 gabT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062314 gabT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001065 gabT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002842 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003644 gabT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007165 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001540 CDS
Person Approved Go view Shigella boydii 227 ADV-0001957 goaG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006944 gabT1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006513 gabT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072451 goaG CDS
Person Approved Go view Shigella flexneri 301 ABT-0087644 goaG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001394 goaG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004069 goaG CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240864 goaG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007225 gabT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002753 goaG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006342 gabT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000681 goaG CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124845 goaG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004328 gabT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006077 gabT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002477 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006375 gabT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005743 gabT CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031065 goaG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007180 gabT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001559 goaG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002633 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005520 gabT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005177 gabT CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002905 goaG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003488 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001555 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004248 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001242 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1360550 to 1371815
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004365puuACDScomplement13594901360908Upstream
ABE-0004369puuDCDSforward13611201361884Upstream
ABE-0004371puuRCDSforward13619111362468Upstream
ABE-0004376puuCCDSforward13627431364230Upstream
ABE-0004378puuBCDSforward13642321365512Upstream
ABE-0004380puuECDSforward13655501366815Matches
ABE-0285441repeat_regionforward13668331366913Downstream
ABE-0004383pspFCDScomplement13669351367912Downstream
ABE-0004387pspACDSforward13680791368747Downstream
ABE-0004389pspBCDSforward13688011369025Downstream
ABE-0004391pspCCDSforward13690251369384Downstream
ABE-0004394pspDCDSforward13693931369614Downstream
ABE-0004397pspECDSforward13696891370003Downstream
ABE-0004400ycjMCDSforward13702161371895Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.