Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004420 (ycjU) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004420 showshow history
Names
ycjU JW1310 ECK1312 pgmB b1317
Product
beta-phosphoglucomutase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1380148 1380807 660 220
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005833 (IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase) Apr 2008
Automated Process Approved IPR010972 (IPR010972 Beta-phosphoglucomutase) Apr 2008
Automated Process Approved IPR010976 (IPR010976 Beta-phosphoglucomutase hydrolase) Apr 2008
Automated Process Approved IPR006402 (IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3) Apr 2008
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR006439 (IPR006439 HAD hydrolase, subfamily IA) Jul 2018
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF13419 (PF13419 Haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010972
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008801 beta-phosphoglucomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010972
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010972
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ycjU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym pgmB Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym JW1310 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1312 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1317 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product beta-phosphoglucomutase Published Annotation - EcoCyc Accession Number: G6655
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted beta-phosphoglucomutase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR010972 Beta-phosphoglucomutase Protein Sequence Similarity - InterPro Domain: IPR010972
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase Protein Sequence Similarity - InterPro Domain: IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3 Protein Sequence Similarity - InterPro Domain: IPR006402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006439 HAD hydrolase, subfamily IA Protein Sequence Similarity - InterPro Domain: IPR006439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010976 Beta-phosphoglucomutase hydrolase Protein Sequence Similarity - InterPro Domain: IPR010976
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13419 Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF13419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 5.4.2.6 Published Annotation - Swiss-Prot Accession Number: P77366 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13918 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945891 Published Annotation - Entrez Gene Database ID: 945891
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77366 Published Annotation - Swiss-Prot Accession Number: P77366 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77366 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787576 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004420 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative beta-phosphoglucomutase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74399.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010972
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008801 beta-phosphoglucomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010972
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010972
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005251 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003819 ycjU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003789 ycjU CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009032 ycjU CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003480 ycjU CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002208 pgmB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006190 pgmB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001381 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009925 pgmB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001304 ycjU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002975 pgmB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008087 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005236 pgmB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005215 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077905 ycjU CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001461 pgmB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001776 pgmB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005419 pgmB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006131 pgmB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001610 ycjU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005968 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000958 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005341 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009706 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009370 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007175 pgmB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006802 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007776 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011277 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007947 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008831 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008255 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007354 pgmB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008669 pgmB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026210 ycjU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005982 ycjU CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006108 pgmB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001759 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001234 ycjU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001346 ycjU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001433 pgmB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001628 pgmB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001630 pgmB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001598 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175727 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001398 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001804 pgmB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131860 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002241 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001595 ycjU CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000984 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001346 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006499 pgmB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072470 ycjU CDS
Person Approved Go view Shigella flexneri 301 ABT-0087656 ycjU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001411 ycjU CDS
Person Approved Go view Shigella sonnei 046 ADD-0002004 ycjU CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22718mutantTn5 InsertionRequest the StrainABE-0004420ycjUycjU::Tn5KAN-I-SceI at position 198 in Minus orientation ,+ pKD460Blattner Laboratory
FB23081mutantTn5 InsertionRequest the StrainABE-0004420ycjUycjU::Tn5KAN-I-SceI at position 198 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1375148 to 1385807
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004412ycjQCDSforward13749631376015Upstream
ABE-0004414ycjRCDSforward13760341376822Upstream
ABE-0004416ycjSCDSforward13768321377887Upstream
ABE-0004418ycjTCDSforward13778841380151Overlaps Upstream
ABE-0004420ycjUCDSforward13801481380807Matches
ABE-0004422ycjV_1CDSpforward13808211381789Downstream
ABE-0285122ycjVpseudogeneforward13808211381902Downstream
ABE-0285045ycjV_2CDSpforward13817891381902Downstream
ABE-0004425ompGCDSforward13819471382852Downstream
ABE-0285442repeat_regionforward13828671382940Downstream
ABE-0004428ycjWCDScomplement13829631383961Downstream
ABE-0004433ycjXCDSforward13841171385514Downstream
ABE-0004436ycjFCDSforward13855111386572Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.