Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004448 (ycjG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004448 showshow history
Names
ycjG ycjH JW1318 ECK1321 b1325
Product
L-Ala-D/L-Glu epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1388930 1389895 966 322
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000558
EnteroFam0004448: Trusted threshold=818.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013341 (IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain) Apr 2008
Automated Process Approved IPR013342 (IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal) Apr 2008
Automated Process Approved IPR001354 (IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase) Apr 2008
Automated Process Approved IPR029065 (IPR029065 Enolase C-terminal domain-like) Jul 2018
Automated Process Approved IPR036849 (IPR036849 Enolase-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF13378 (PF13378 Enolase C-terminal domain-like) Jul 2018
Automated Process Approved PF02746 (PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ycjG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1318 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ycjH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1321 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1325 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-Ala-D/L-Glu epimerase Experimental - PubMed ID: 11747447
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0004448: Trusted threshold=818.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000558
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase Protein Sequence Similarity - InterPro Domain: IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR013341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029065 Enolase C-terminal domain-like Protein Sequence Similarity - InterPro Domain: IPR029065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13378 Enolase C-terminal domain-like Protein Sequence Similarity - PFAM Model Name: PF13378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036849 Enolase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036849
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.1.1.- Published Annotation - Web Resource URL: http://biocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=b1325
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment YcjG can epimerize L-Ala-L-X dipeptides where X is any amino acid except for arginine, lysine or proline. Cys was not assayed. Experimental - PubMed ID: 11747447
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Approved comment No known bacterially encoded peptidase can cleave the L-Ala-D-Glu dipeptide component of peptidoglycan. It is hypothesized that the epipermerization of L-Ala-D-Glu to L-Ala-L-Glu permits hydrolysis. Published Annotation - PubMed ID: 11747447
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved db xref EcoGene:EG13228 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004448 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P51981 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081876 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946013 Published Annotation - Entrez Gene Database ID: 946013
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P51981 Published Annotation - Swiss-Prot Accession Number: P51981 Jan 2005
Person Approved function catalyzes the epimerization between L-Ala-D-Glu and L-Ala-L-Glu Experimental - PubMed ID: 11747447
Reference: Escherichia coli MG1655 		Jan 2007
Automated Process Approved note putative muconate cycloisomerase I Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74407.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001783 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000364 ycjG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000557 ycjG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001606 ycjG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000238 ycjG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002200 ycjG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001769 ycjG CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002407 ycjG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003062 ycjG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009142 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019465 ycjG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004110 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002906 ycjG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301815 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002035 ycjG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001707 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004083 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006198 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001390 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009933 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001312 ycjG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002967 ycjG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008078 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005244 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005207 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077913 ycjG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001469 ycjG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001785 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005411 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006139 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001618 ycjG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005976 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000966 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005349 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009714 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009378 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007167 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006810 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007784 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011285 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007955 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008839 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008247 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007362 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008661 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026202 ycjG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005991 ycjG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006116 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001751 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001242 ycjG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001355 ycjG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001425 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001636 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001622 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175735 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001406 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001796 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131868 ycjG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002233 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001603 ycjG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001756 ycjG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002755 ycjG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001312 ycjG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000230 ycjG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004521 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001375 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003669 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001370 ycjG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002717 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002081 ycjG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002140 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009792 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001791 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290170 ycjG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005211 ycjg3 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060340 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001256 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000361 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005645 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001354 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001961 ycjG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005923 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004433 ycjG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004377 ycjG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004786 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006229 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005170 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005221 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004683 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005303 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006170 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004613 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001205 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001203 ycjG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001589 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006417 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005196 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005890 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005227 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107896 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083299 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002031 ycjG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095476 ycjG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007663 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005879 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007855 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003178 ycjG CDS
Person Uncurated Go view Shigella boydii 227 ADV-0001940 ycjG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006964 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001606 ycjG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072479 ycjG CDS
Person Approved Go view Shigella flexneri 301 ABT-0087663 ycjG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001419 ycjG CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0001992 ycjG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001744 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006194 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000957 ycjG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000698 ycjG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002014 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239380 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006500 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002044 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004831 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001119 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123032 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007028 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006689 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002776 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007925 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006082 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031695 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008115 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002172 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000953 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007027 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005767 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002344 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002784 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002246 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012910 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004009 ycjG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22719mutantTn5 InsertionRequest the StrainABE-0004448ycjGycjG::Tn5KAN-I-SceI at position 142 in Plus orientation ,+ pKD460Blattner Laboratory
FB23083mutantTn5 InsertionRequest the StrainABE-0004448ycjGycjG::Tn5KAN-I-SceI at position 142 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1383930 to 1394895
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004428ycjWCDScomplement13829631383961Upstream
ABE-0004433ycjXCDSforward13841171385514Upstream
ABE-0004436ycjFCDSforward13855111386572Upstream
ABE-0004440tyrRCDSforward13867201388261Upstream
ABE-0285443repeat_regionforward13882721388296Upstream
ABE-0004442tpxCDScomplement13883051388811Upstream
ABE-0004448ycjGCDSforward13889301389895Matches
ABE-0004450mpaACDScomplement13898701390598Overlaps Downstream
ABE-0285046ymjCpseudogenecomplement13907241390862Downstream
ABE-0285156ymjDpseudogenecomplement13908681390933Downstream
ABE-0004453ycjYCDScomplement13909331391853Downstream
ABE-0004457pgrRCDSforward13919911392890Downstream
ABE-0004460mppACDSforward13932271394840Downstream
ABE-0004462ynaICDScomplement13948911395922Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.