Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004460 (mppA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004460 showshow history
Names
mppA ynaH JW1322 ECK1326 b1329
Product
periplasmic-binding component of an ABC superfamily murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1393227 1394840 1614 538
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000914 (IPR000914 Solute-binding protein family 5 domain) Apr 2008
Automated Process Approved PF00496 (PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mppA Experimental - PubMed ID: 10438753
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK1326 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1322 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ynaH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1329 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic-binding component of an ABC superfamily murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name periplasmic murein tripeptide (L-Ala-gamma-D-Glut-m-DAP) permease Experimental - PubMed ID: 10438753
Reference: Escherichia coli 		Jan 2006
Automated Process Approved alternate product name murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name periplasmic murein tripeptide transport protein; negative regulator of multiple antibiotic resistance Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Protein Sequence Similarity - PFAM Model Name: PF00496
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000914 Solute-binding protein family 5 domain Protein Sequence Similarity - InterPro Domain: IPR000914
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.182 (transport; substrate; tripeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.9 (transport; Transporters of Unknown Classification) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.34 (metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13376 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081878 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945951 Published Annotation - Entrez Gene Database ID: 945951
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77348 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004460 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77348 Published Annotation - Swiss-Prot Accession Number: P77348 Jan 2005
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note periplasmic-binding component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0000270 - peptidoglycan metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74411.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000431 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001339 mppA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001396 mppA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001745 mppA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000012 mppA CDS
Ortholog
Automated Process Approved Go view Brenneria salicis ATCC 15712 [T] AMK-0001434 CDS
Automated Process Approved Go view Brenneria sp. EniD312 AKG-0003132 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002197 mppA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001771 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002405 mppA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003060 mppA CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0006504 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019297 mppA CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0002351 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002904 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0301812 mppA CDS
Automated Process Approved Go view Erwinia amylovora ATCC BAA-2158 APN-0002034 mppA CDS
Person Uncurated Go view Erwinia amylovora CFBP 1430 AKH-0001936 mppA CDS
Person Uncurated Go view Erwinia billingiae 661 [T] AKT-0002354 CDS
Person Uncurated Go view Erwinia pyrifoliae DSM 12163 [T] AJZ-0001903 mppA CDS
Person Uncurated Go view Erwinia pyrifoliae Ep1/96 AKA-0001776 CDS
Person Uncurated Go view Erwinia sp. Ejp617 AOU-0003062 CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001708 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004081 mppA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006204 mppA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009940 mppA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001317 mppA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002962 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008072 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005252 mppA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005201 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077919 mppA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001475 mppA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001792 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005404 mppA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006146 mppA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001623 mppA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005982 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005356 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009721 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009385 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007161 mppA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006817 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007790 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011292 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007962 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008846 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008239 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007369 mppA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008654 mppA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026194 mppA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005996 mppA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006121 mppA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001746 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001246 mppA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001360 mppA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001419 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001640 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001617 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001612 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175740 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001413 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001791 mppA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131875 mppA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002226 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001608 mppA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001754 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002757 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001314 mppA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000228 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0006429 CDS
Automated Process Approved Go view Pantoea agglomerans IG1 APM-0001373 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0003671 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0001368 mppA CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0002719 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0002079 mppA CDS
Person Uncurated Go view Pantoea ananatis LMG 5342 APQ-0002208 mppA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002142 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009790 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0001793 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290168 mppA CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0005209 mppA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062252 mppA CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0001060 mppA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002421 CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0003593 mppA CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0007264 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005647 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001360 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005925 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004440 mppA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004384 mppA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004788 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006227 mppA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005168 mppA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005219 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004681 mppA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005301 mppA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006168 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004615 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001207 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001205 mppA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001591 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006415 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005198 mppA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005888 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005225 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107901 mppA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083297 mppA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002029 mppA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095472 mppA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007665 mppA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005877 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007853 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003181 CDS
Person Approved Go view Shigella boydii 227 ADV-0001925 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006975 mppA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006483 mppA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001614 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072489 CDS
Person Approved Go view Shigella flexneri 301 ABT-0088132 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001963 CDS
Person Approved Go view Shigella sonnei 046 ADD-0001981 mppA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001742 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006188 mppA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000959 mppA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000696 mppA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002012 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239378 mppA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006502 mppA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002041 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004829 mppA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001121 mppA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123028 mppA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007030 mppA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006687 mppA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003131 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007927 mppA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006080 mppA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031697 mppA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008117 mppA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002169 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000955 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007029 mppA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005769 mppA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002342 mppA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002781 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002248 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012918 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004007 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22413mutantTn5 InsertionRequest the StrainABE-0004460mppAb1329::Tn5KAN-I-SceI at position 349 in Minus orientation ,+ pKD460Blattner Laboratory
FB23086mutantTn5 InsertionRequest the StrainABE-0004460mppAb1329::Tn5KAN-I-SceI at position 349 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1388227 to 1399840
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004440tyrRCDSforward13867201388261Upstream
ABE-0285443repeat_regionforward13882721388296Upstream
ABE-0004442tpxCDScomplement13883051388811Upstream
ABE-0004448ycjGCDSforward13889301389895Upstream
ABE-0004450mpaACDScomplement13898701390598Upstream
ABE-0285046ymjCpseudogenecomplement13907241390862Upstream
ABE-0285156ymjDpseudogenecomplement13908681390933Upstream
ABE-0004453ycjYCDScomplement13909331391853Upstream
ABE-0004457pgrRCDSforward13919911392890Upstream
ABE-0004460mppACDSforward13932271394840Matches
ABE-0004462ynaICDScomplement13948911395922Downstream
ABE-0004465is_elementcomplement13960441397238Downstream
ABE-0285444mobile_elementforward13960441397238Downstream
ABE-0004467insH4CDSforward13961121397092Downstream
ABE-0004470ynaJCDSforward13973651397622Downstream
ABE-0004472uspECDScomplement13976721398622Downstream
ABE-0004475fnrCDScomplement13987741399526Downstream
ABE-0004486ogtCDScomplement13997211400236Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.