Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004462 (ynaI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004462 showshow history
Names
ynaI JW1323 ECK1327 b1330
Product
small conductance mechanosensitive channel protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1394891 1395922 1032 344
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011066 (IPR011066 Mechanosensitive ion channel MscS, C-terminal) Apr 2008
Automated Process Approved IPR010920 (IPR010920 LSM domain superfamily) Apr 2008
Automated Process Approved IPR011014 (IPR011014 Mechanosensitive ion channel MscS, transmembrane-2) Apr 2008
Automated Process Approved IPR006685 (IPR006685 Mechanosensitive ion channel MscS) Apr 2008
Automated Process Approved IPR006686 (IPR006686 Mechanosensitive ion channel MscS, conserved site) Apr 2008
Automated Process Approved PF00924 (PF00924 Mechanosensitive ion channel) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006685
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ynaI Published Annotation - Swiss-Prot Accession Number: P77253 Aug 2002
Person Approved synonym ECK1327 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1323 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1330 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product small conductance mechanosensitive channel protein Published Annotation - EcoCyc Accession Number: G6666
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name conserved inner membrane protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative transmembrane protein Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name mechanosensitive channel protein, very small conductance Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR011066 Mechanosensitive ion channel MscS, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Protein Sequence Similarity - InterPro Domain: IPR011014
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00924 Mechanosensitive ion channel Protein Sequence Similarity - PFAM Model Name: PF00924
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006685 Mechanosensitive ion channel MscS Protein Sequence Similarity - InterPro Domain: IPR006685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006686 Mechanosensitive ion channel MscS, conserved site Protein Sequence Similarity - InterPro Domain: IPR006686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010920 LSM domain superfamily Protein Sequence Similarity - InterPro Domain: IPR010920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787591 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945898 Published Annotation - Entrez Gene Database ID: 945898
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEB5 Published Annotation - Swiss-Prot Accession Number: P0AEB5 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEB5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004462 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13924 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74412.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006685
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006712 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003081 ynaI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003186 ynaI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009523 ynaI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002944 ynaI CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002402 mscS_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003053 mscS_1 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004080 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006205 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001397 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009941 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001318 ynaI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002961 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008071 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005253 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005200 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077920 ynaI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001476 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001793 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005403 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006147 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001624 ynaI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005983 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000974 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005357 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009722 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009386 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007160 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006818 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007791 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011293 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007963 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008847 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008238 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007370 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008653 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026193 ynaI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005997 ynaI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006122 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001745 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001247 ynaI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001361 ynaI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001418 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001641 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001616 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001613 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175741 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001414 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001790 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131876 ynaI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002225 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001609 ynaI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005664 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001373 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001943 ynaI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005942 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004486 ynaI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004425 ynaI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004804 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006210 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005151 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005202 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005284 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006151 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004632 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001223 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001221 ynaI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001610 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006399 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005222 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005872 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005209 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0107932 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083281 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002012 ynaI CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095435 ynaI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007682 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005858 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007040 CDS
Person Approved Go view Shigella boydii 227 ADV-0001924 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006976 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006482 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001615 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072490 CDS
Person Approved Go view Shigella flexneri 301 ABT-0088131 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001962 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005451 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0004462 ynaI lambda repressor assay Doodle - bnumber: b1330 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1389891 to 1400922
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004448ycjGCDSforward13889301389895Downstream
ABE-0004450mpaACDScomplement13898701390598Downstream
ABE-0285046ymjCpseudogenecomplement13907241390862Downstream
ABE-0285156ymjDpseudogenecomplement13908681390933Downstream
ABE-0004453ycjYCDScomplement13909331391853Downstream
ABE-0004457pgrRCDSforward13919911392890Downstream
ABE-0004460mppACDSforward13932271394840Downstream
ABE-0004462ynaICDScomplement13948911395922Matches
ABE-0004465is_elementcomplement13960441397238Upstream
ABE-0285444mobile_elementforward13960441397238Upstream
ABE-0004467insH4CDSforward13961121397092Upstream
ABE-0004470ynaJCDSforward13973651397622Upstream
ABE-0004472uspECDScomplement13976721398622Upstream
ABE-0004475fnrCDScomplement13987741399526Upstream
ABE-0004486ogtCDScomplement13997211400236Upstream
ABE-0004488abgTCDScomplement14002471401773Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.