Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004488 (abgT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004488 showshow history
Names
abgT JW5822 ECK1332 ydaH b1336
Product
p-aminobenzoyl glutamate:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1400247 1401773 1527 509
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011540 (IPR011540 AbgT, Proteobacteria) Apr 2008
Automated Process Approved IPR004697 (IPR004697 p-aminobenzoyl-glutamate transport protein AbgT) Apr 2008
Automated Process Approved PF03806 (PF03806 AbgT putative transporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:1902604 p-aminobenzoyl-glutamate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004697, IPR011540
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015558 secondary active p-aminobenzoyl-glutamate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004697, IPR011540
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name abgT Experimental - PubMed ID: 9829935
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ydaH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5822 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1332 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1336 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product p-aminobenzoyl glutamate:H+ symporter Published Annotation - EcoCyc Accession Number: EG12853
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name aminobenzoyl-glutamate transport protein Experimental - PubMed ID: 9829935
Reference: Escherichia coli 		Jan 2006
Person Uncurated alternate product name putative p-aminobenzoyl-glutamate transport protein (AbgT family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name predicted cryptic aminobenzoyl-glutamate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name p-aminobenzoyl-glutamate transporter; membrane protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR004697 p-aminobenzoyl-glutamate transport protein AbgT Protein Sequence Similarity - InterPro Domain: IPR004697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011540 AbgT, Proteobacteria Protein Sequence Similarity - InterPro Domain: IPR011540
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03806 AbgT putative transporter family Protein Sequence Similarity - PFAM Model Name: PF03806
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.2.A.68 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The p-Aminobenzoyl-glutamate Transporter (AbgT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.150 (transport; substrate; p-aminobenzoyl-glutamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945912 Published Annotation - Entrez Gene Database ID: 945912
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P46133 Published Annotation - Swiss-Prot Accession Number: P46133 Jan 2005
Automated Process Approved db xref GI:87081879 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P46133 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004488 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12853 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74418.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:1902604 p-aminobenzoyl-glutamate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004697, IPR011540
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015558 secondary active p-aminobenzoyl-glutamate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004697, IPR011540
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004035 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003084 abgT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002878 abgT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004229 abgT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003196 abgT CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001944 abgT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004851 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015244 abgT CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002465 abgT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006210 abgT CDS
Person Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004883 abgT pseudogene
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009946 abgT CDS
Person Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005616 abgT pseudogene
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008065 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005258 abgT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005195 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077925 abgT pseudogene
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001481 abgT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001798 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005398 abgT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006152 abgT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005988 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000979 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005362 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009727 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009391 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007155 abgT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006823 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007796 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011298 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007968 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008852 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007375 abgT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008648 abgT CDS
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285344 abgT pseudogene
Automated Process Approved Go view Escherichia coli HS ADR-0006127 abgT CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001253 abgT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001367 abgT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001413 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001646 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001611 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0005218 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0001419 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001785 abgT CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285279 abgT pseudogene
Person Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001614 abgT pseudogene
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001536 abgT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004372 abgT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004951 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003427 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002309 abgT CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008117 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003835 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007321 ydaH CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145305 abgT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001653 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263699 CDS
Person Approved Go view Shigella boydii 227 ADV-0001916 abgT pseudogene
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006476 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0005686 abgT pseudogene
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072503 abgT pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0286417 abgT pseudogene
Person Uncurated Go view Shigella flexneri 8401 BAG-0004813 abgT pseudogene
Person Uncurated Go view Shigella sonnei 046 ADD-0001970 abgT pseudogene
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20297mutantTn5 InsertionRequest the StrainABE-0004488abgTydaH::Tn5KAN-I-SceI at position 305 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1395247 to 1406773
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004462ynaICDScomplement13948911395922Downstream
ABE-0004465is_elementcomplement13960441397238Downstream
ABE-0285444mobile_elementforward13960441397238Downstream
ABE-0004467insH4CDSforward13961121397092Downstream
ABE-0004470ynaJCDSforward13973651397622Downstream
ABE-0004472uspECDScomplement13976721398622Downstream
ABE-0004475fnrCDScomplement13987741399526Downstream
ABE-0004486ogtCDScomplement13997211400236Downstream
ABE-0004488abgTCDScomplement14002471401773Matches
ABE-0004491abgBCDScomplement14018101403255Upstream
ABE-0285718matS6protein_bindforward14018211401833Upstream
ABE-0004493abgACDScomplement14032551404565Upstream
ABE-0004496abgRCDSforward14047411405649Upstream
ABE-0047247mcaSncRNAcomplement14056561405751Upstream
ABE-0004502smrACDSforward14059791406542Upstream
ABE-0004504dgcMCDScomplement14065631407795Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.