Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004491 (abgB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004491 showshow history
Names
abgB ydaI JW1331 ECK1333 b1337
Product
p-aminobenzoyl-glutamate hydrolase subunit B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1401810 1403255 1446 482
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010168 (IPR010168 (DEPRECATED) Peptidase M20D, amidohydrolase) Apr 2008
Automated Process Approved IPR002933 (IPR002933 Peptidase M20) Apr 2008
Automated Process Approved IPR017439 (IPR017439 Amidohydrolase) Jul 2018
Automated Process Approved IPR036264 (IPR036264 Bacterial exopeptidase dimerisation domain) Jul 2018
Automated Process Approved PF01546 (PF01546 Peptidase family M20/M25/M40) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933, IPR017439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name abgB Experimental - PubMed ID: 9829935
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK1333 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1331 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ydaI Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1337 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product p-aminobenzoyl-glutamate hydrolase subunit B Published Annotation - EcoCyc Accession Number: G6669
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name predicted peptidase, aminobenzoyl-glutamate utilization protein Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name p-aminobenzoyl-glutamate hydrolase, B subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative amidohydrolase (aminoacylase), p-aminobenzoyl-glutamate utilization Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name aminobenzoyl-glutamate utilization protein Experimental - PubMed ID: 9829935
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR010168 (DEPRECATED) Peptidase M20D, amidohydrolase Protein Sequence Similarity - InterPro Domain: IPR010168
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002933 Peptidase M20 Protein Sequence Similarity - InterPro Domain: IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017439 Amidohydrolase Protein Sequence Similarity - InterPro Domain: IPR017439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036264 Bacterial exopeptidase dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR036264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01546 Peptidase family M20/M25/M40 Protein Sequence Similarity - PFAM Model Name: PF01546
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.-.-.- Protein Sequence Similarity - InterPro Domain: IPR010168
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13351 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787598 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945950 Published Annotation - Entrez Gene Database ID: 945950
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76052 Published Annotation - Swiss-Prot Accession Number: P76052 Jan 2006
Automated Process Approved db xref ASAP:ABE-0004491 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76052 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74419.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933, IPR017439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002337 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003727 abgB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003598 abgB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004073 abgB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003463 abgB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001945 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004849 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017899 abgB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002466 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006211 abgB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009947 abgB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008064 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005259 abgB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005194 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001482 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001799 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005397 abgB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006153 abgB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005989 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000980 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005363 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009728 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009392 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007154 abgB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006824 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007797 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011299 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007969 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008853 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008229 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007376 abgB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008647 abgB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026183 abgB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006128 abgB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001254 abgB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001368 abgB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001411 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001648 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001609 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001420 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001784 abgB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131886 abgB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002216 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001537 abgB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004373 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004950 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003428 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002308 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008118 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003836 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007322 abgB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064411 abgB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003517 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004250 abgB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002447 abgB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009133 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145307 abgB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001654 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0001915 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006986 abgB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001969 abgB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1396810 to 1408255
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004465is_elementcomplement13960441397238Downstream
ABE-0285444mobile_elementforward13960441397238Downstream
ABE-0004467insH4CDSforward13961121397092Downstream
ABE-0004470ynaJCDSforward13973651397622Downstream
ABE-0004472uspECDScomplement13976721398622Downstream
ABE-0004475fnrCDScomplement13987741399526Downstream
ABE-0004486ogtCDScomplement13997211400236Downstream
ABE-0004488abgTCDScomplement14002471401773Downstream
ABE-0004491abgBCDScomplement14018101403255Matches
ABE-0285718matS6protein_bindforward14018211401833Contained Within
ABE-0004493abgACDScomplement14032551404565Overlaps Upstream
ABE-0004496abgRCDSforward14047411405649Upstream
ABE-0047247mcaSncRNAcomplement14056561405751Upstream
ABE-0004502smrACDSforward14059791406542Upstream
ABE-0004504dgcMCDScomplement14065631407795Upstream
ABE-0285822ynaNCDSforward14079891408036Upstream
ABE-0004508zntBCDSforward14080501409033Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.