Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004608 (ompN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004608 showshow history
Names
ompN ynaG JW1371 ECK1372 b1377
Product
outer membrane porin N
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1435760 1436893 1134 378
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001897 (IPR001897 Porin, gammaproteobacterial) Apr 2008
Automated Process Approved IPR001702 (IPR001702 Porin, Gram-negative type) Apr 2008
Automated Process Approved PF00267 (PF00267 Gram-negative porin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompN Experimental - PubMed ID: 9642192
Reference: Escherichia coli
Aug 2002
Person Approved synonym JW1371 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ynaG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym ECK1372 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1377 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product outer membrane porin N Published Annotation - EcoCyc Accession Number: G6700
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Uncurated alternate product name outer membrane pore protein N, non-specific Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name outer membrane porin Experimental - PubMed ID: 9642192
Reference: Escherichia coli
Jan 2006
Protein Family
Automated Process Approved protein family IPR001702 Porin, Gram-negative type Protein Sequence Similarity - InterPro Domain: IPR001702
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF00267 Gram-negative porin Protein Sequence Similarity - PFAM Model Name: PF00267
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR001897 Porin, gammaproteobacterial Protein Sequence Similarity - InterPro Domain: IPR001897
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 4.1.B (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13375 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0004608 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77747 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P77747 Published Annotation - Swiss-Prot Accession Number: P77747 Jan 2005
Automated Process Approved db xref GeneID:946313 Published Annotation - Entrez Gene Database ID: 946313
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1787641 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function putative membrane; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74459.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005756 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002300 ompN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002132 ompN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002046 ompN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002479 ompN CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002686 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002371 ompN_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003037 ompN_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002866 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004532 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005401 ompN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001414 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009958 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001387 ompN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002944 CDS
Person Approved Go view Escherichia coli ATCC 8739 AEM-0008054 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005270 ompN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005183 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077938 ompN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001491 ompN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001809 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005368 ompN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006227 ompN CDS
Person Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001641 ompN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006000 ompN CDS
Person Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010934 ompN pseudogene
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0285386 ompN pseudogene
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006016 ompN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006140 ompN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001727 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001289 ompN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001410 ompN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001401 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001677 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001598 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001630 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175760 CDS
Person Approved Go view Escherichia coli SE11 AFS-0001489 CDS
Person Approved Go view Escherichia coli SMS-3-5 AFT-0001775 ompN CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285307 ompN pseudogene
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001625 ompN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004257 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002853 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001449 ompN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000193 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005875 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001562 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001726 ompN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006139 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005146 ompN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004979 ompN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008912 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006004 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004940 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004986 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004451 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005071 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005949 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004838 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001390 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001382 ompN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001857 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006192 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006791 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005659 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004991 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0108359 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083055 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001779 ompN CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094917 ompN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007895 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005649 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008505 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004075 ompF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266670 CDS
Person Approved Go view Shigella boydii 227 ADV-0001871 CDS
Person Approved Go view Shigella boydii BS512 ADJ-0007022 ompN CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0004326 ompN CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001677 ompN pseudogene
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072517 ompN pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0088117 ompN pseudogene
Person Uncurated Go view Shigella flexneri 8401 BAG-0001942 ompN pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0001913 ompN CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002836 opnP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006092 ompF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005533 ompF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006057 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004504 ompF CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008284 ompF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005047 ompF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005197 ompF CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005852 ompF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001828 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003136 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003999 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1430760 to 1441893
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285446misc_featureforward14118991434958Downstream
ABE-0234208Racprophageforward14119251434984Downstream
ABE-0004595stfRCDSforward14290491432411Downstream
ABE-0004597tfaRCDSforward14324111432986Downstream
ABE-0004599pinRCDScomplement14330841433674Downstream
ABE-0004602ynaECDScomplement14339911434224Downstream
ABE-0285755ynaMCDScomplement14342931434406Downstream
ABE-0285236ttcCpseudogenecomplement14349591435008Downstream
ABE-0004605uspFCDScomplement14351851435619Downstream
ABE-0004608ompNCDScomplement14357601436893Matches
ABE-0047248micCncRNAforward14371211437229Upstream
ABE-0004613ydbKCDScomplement14372601440784Upstream
ABE-0285050ydbJCDSforward14410581441324Upstream
ABE-0004616hslJCDScomplement14413211441743Upstream
ABE-0004619ldhACDScomplement14418541442843Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.