Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004613 (ydbK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004613 showshow history
Names
ydbK JW1372 ECK1374 nifJ b1378
Product
putative pyruvate-flavodoxin oxidoreductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1437260 1440784 3525 1175
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR000585 (IPR000585 Hemopexin-like domain) Apr 2008
Automated Process Approved IPR011766 (IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding) Apr 2008
Automated Process Approved IPR011895 (IPR011895 Pyruvate-flavodoxin oxidoreductase) Apr 2008
Automated Process Approved IPR002880 (IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal) Apr 2008
Automated Process Approved IPR009014 (IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II) Apr 2008
Automated Process Approved IPR002869 (IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain) Apr 2008
Automated Process Approved IPR033412 (IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II) Jul 2018
Automated Process Approved IPR019752 (IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain) Jul 2018
Automated Process Approved IPR019456 (IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain) Jul 2018
Automated Process Approved IPR029061 (IPR029061 Thiamin diphosphate-binding fold) Jul 2018
Automated Process Approved PF17147 (PF17147 Pyruvate:ferredoxin oxidoreductase core domain II) Jul 2018
Automated Process Approved PF01855 (PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg) Jul 2018
Automated Process Approved PF01558 (PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase) Jul 2018
Automated Process Approved PF02775 (PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain) Jul 2018
Automated Process Approved PF10371 (PF10371 Domain of unknown function) Jul 2018
Automated Process Approved PF13484 (PF13484 4Fe-4S double cluster binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0022900 electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011895
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002880, IPR019752, IPR019456, IPR011895, IPR002869
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002880
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydbK Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1374 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1372 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym nifJ Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved locus tag b1378 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative pyruvate-flavodoxin oxidoreductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name pyruvate synthase Published Sequence Analysis - PubMed ID: 12952533
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain Protein Sequence Similarity - InterPro Domain: IPR002869
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002880
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Protein Sequence Similarity - InterPro Domain: IPR009014
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Protein Sequence Similarity - InterPro Domain: IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000585 Hemopexin-like domain Protein Sequence Similarity - InterPro Domain: IPR000585
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011895 Pyruvate-flavodoxin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR011895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13484 4Fe-4S double cluster binding domain Protein Sequence Similarity - PFAM Model Name: PF13484
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029061 Thiamin diphosphate-binding fold Protein Sequence Similarity - InterPro Domain: IPR029061
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Protein Sequence Similarity - PFAM Model Name: PF17147
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Protein Sequence Similarity - PFAM Model Name: PF01855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain Protein Sequence Similarity - InterPro Domain: IPR019456
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR019752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF10371 Domain of unknown function Protein Sequence Similarity - PFAM Model Name: PF10371
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Protein Sequence Similarity - PFAM Model Name: PF02775
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Protein Sequence Similarity - InterPro Domain: IPR033412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF01558
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.2.-.- Published Annotation - Database Name: EC2GO: GO:0016903
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.7.- Published Annotation - Swiss-Prot Accession Number: P52647 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P52647 Published Annotation - Swiss-Prot Accession Number: P52647 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52647 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787642 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004613 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946587 Published Annotation - Entrez Gene Database ID: 946587
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13183 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative oxidoreductase, Fe-S subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74460.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0022900 electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011895
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002880, IPR019752, IPR019456, IPR011895, IPR002869
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002880
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011895
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000057 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001910 ydbK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001922 ydbK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001174 ydbK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002063 ydbK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000592 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002882 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002032 nifJ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001786 nifJ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002369 porA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003035 porA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008420 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000737 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002865 nifJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005403 ydbK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001415 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009960 ydbK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001388 ydbK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002943 nifJ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008053 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005181 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077939 ydbK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001492 nifJ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001810 nifJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005366 ydbK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006229 ydbK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001643 ydbK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006001 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000993 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005377 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009742 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009407 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007141 ydbK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006838 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007811 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011314 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007984 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008868 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008690 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007391 ydbK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008632 ydbK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026102 ydbK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006018 nifJ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006142 ydbK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001726 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001290 ydbK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001412 ydbK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001399 nifJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001679 nifJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001596 nifJ CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001631 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179610 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001490 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001774 ydbK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131968 ydbK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002129 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001626 ydbK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001730 nifJ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002855 nifJ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001450 ydbK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000192 nifJ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000447 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000206 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001260 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005283 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005680 nifJ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001388 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001929 nifJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005959 nifJ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004573 nifJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004823 nifJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006193 nifJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005133 nifJ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005183 nifJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004645 nifJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005266 nifJ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006134 nifJ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004650 nifJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001238 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001236 nifJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001631 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006381 nifJ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005239 nifJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005854 nifJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005191 nifJ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107969 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083267 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001997 nifJ CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095398 nifJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007699 nifJ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005840 nifJ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007022 nifJ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003188 nifJ CDS
Person Approved Go view Shigella boydii 227 ADV-0001870 ydbK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007024 ydbK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004324 ydbK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001680 ydbK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072518 ydbK CDS
Person Approved Go view Shigella flexneri 301 ABT-0088116 ydbK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001941 ydbK CDS
Person Approved Go view Shigella sonnei 046 ADD-0001912 ydbK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003419 VCA0530 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001736 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006160 nifJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000964 nifJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000693 nifJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002008 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239369 nifJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002035 nifJ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004823 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001126 nifJ CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123011 nifJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007036 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006682 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003614 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007933 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006074 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031703 nifJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008122 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002162 nifJ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000963 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007035 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005774 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002337 nifJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002774 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002257 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012963 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003998 nifJ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1432260 to 1445784
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285446misc_featureforward14118991434958Downstream
ABE-0234208Racprophageforward14119251434984Downstream
ABE-0004595stfRCDSforward14290491432411Downstream
ABE-0004597tfaRCDSforward14324111432986Downstream
ABE-0004599pinRCDScomplement14330841433674Downstream
ABE-0004602ynaECDScomplement14339911434224Downstream
ABE-0285755ynaMCDScomplement14342931434406Downstream
ABE-0285236ttcCpseudogenecomplement14349591435008Downstream
ABE-0004605uspFCDScomplement14351851435619Downstream
ABE-0004608ompNCDScomplement14357601436893Downstream
ABE-0047248micCncRNAforward14371211437229Downstream
ABE-0004613ydbKCDScomplement14372601440784Matches
ABE-0285050ydbJCDSforward14410581441324Upstream
ABE-0004616hslJCDScomplement14413211441743Upstream
ABE-0004619ldhACDScomplement14418541442843Upstream
ABE-0004623ydbHCDSforward14430511445690Upstream
ABE-0004625ynbECDSforward14456871445872Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.