Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004619 (ldhA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004619 showshow history
Names
ldhA ECK1377 JW1375 htpH hslI hslF b1380
Product
D-lactate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1441854 1442843 990 330
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000565
EnteroFam0004619: Trusted threshold=924.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006140 (IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain) Apr 2008
Automated Process Approved IPR006139 (IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02826 (PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain) Jul 2018
Automated Process Approved PF00389 (PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006140, IPR006139
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ldhA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym hslF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym htpH Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1377 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1375 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym hslI Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1380 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product D-lactate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name fermentative D-lactate dehydrogenase, NAD-dependent Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0004619: Trusted threshold=924.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000565
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF02826
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00389
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.1.1.28 Published Annotation - Swiss-Prot Accession Number: P52643 Feb 2006
Automated Process Uncurated EC number 1.1.1.- Published Annotation - Database Name: EC2GO: GO:0016616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13186 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787645 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P52643 Published Annotation - Swiss-Prot Accession Number: P52643 Jan 2005
Automated Process Approved db xref GeneID:946315 Published Annotation - Entrez Gene Database ID: 946315
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52643 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004619 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Fermentation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006113 - fermentation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74462.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006140, IPR006139
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000565 ldhA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000531 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001189 ldhA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001259 ldhA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001596 ldhA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001438 ldhA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001439 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003308 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002037 ldhA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001790 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002365 ldhA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003032 ldhA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006516 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019308 ldhA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002343 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002546 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301766 ldhA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002017 ldhA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001719 ldhA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004054 idhA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005406 idhA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001418 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009963 idhA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001391 ldhA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002940 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008048 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005276 idhA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005178 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077943 ldhA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001495 ldhA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001814 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005362 idhA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006233 idhA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001646 ldhA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006005 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000996 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005381 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009746 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009411 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007137 idhA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006842 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007815 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011318 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007988 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008872 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008686 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007395 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008628 idhA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026100 ldhA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006022 ldhA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006145 idhA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001723 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001292 ldhA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001415 ldhA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001396 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001682 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001593 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001635 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175769 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001494 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001770 idhA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0131970 ldhA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002126 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001630 ldhA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001726 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002862 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001453 ldhA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000189 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006440 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001364 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003679 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001363 ldhA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002725 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002074 ldhA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002148 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009780 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001799 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290157 ldhA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005200 ldhA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062260 ldhA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003951 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001717 ldhA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003601 ldhA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007237 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141720 ldhA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005684 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001391 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001926 ldhA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005963 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004588 ldhA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004480 ldhA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004827 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006189 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005129 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005179 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004641 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005262 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006130 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004654 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001241 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001239 ldhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001636 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006376 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005243 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005851 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005187 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0107979 ldhA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083264 ldhA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001993 ldhA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095386 ldhA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007703 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005836 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007018 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003193 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264523 ldhA CDS
Person Approved Go view Shigella boydii 227 ADV-0001868 ldhA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007027 idhA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004320 idhA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001683 ldhA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072527 ldhA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0256006 ldhA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001934 ldhA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001909 ldhA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003081 VCA0192 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003949 ldhA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001732 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006146 hslI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000967 ldhA1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000689 ldhA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000484 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239353 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006325 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002029 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004818 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001131 ldhA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122987 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007041 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007472 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003618 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007938 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006069 ldhA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031708 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008127 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002155 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000970 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007040 ldhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005779 ldhA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002332 ldhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002767 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002264 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013024 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003987 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20302mutantTn5 InsertionRequest the StrainABE-0004619ldhAldhA::Tn5KAN-2 at position 612 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1436854 to 1447843
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004608ompNCDScomplement14357601436893Downstream
ABE-0047248micCncRNAforward14371211437229Downstream
ABE-0004613ydbKCDScomplement14372601440784Downstream
ABE-0285050ydbJCDSforward14410581441324Downstream
ABE-0004616hslJCDScomplement14413211441743Downstream
ABE-0004619ldhACDScomplement14418541442843Matches
ABE-0004623ydbHCDSforward14430511445690Upstream
ABE-0004625ynbECDSforward14456871445872Upstream
ABE-0004627ydbLCDSforward14458801446206Upstream
ABE-0004630feaRCDScomplement14463781447283Upstream
ABE-0004637feaBCDSforward14475191449018Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.