Alignments
Protein Domains
ASAP ID
Names
paaA
JW1383
ECK1385
ydbO
b1388
Product
phenylacetyl-CoA 1,2-epoxidase monooxygenase subunit
Type
CDS
Location
#
Contig
Strand
Left
Right
Length (b.p.)
Length (a.a.)
1
Chromosome
forward
1453927
1454856
930
310
Sequence
Context
View a table of nearby
features , or turn on JavaScript (if possible) to see an inline
graphical view
Browse sequence in
GaPP
You last hovered over feature (none)
Run Searches
Protein Families
top
Family
Annotated
IPR007814 (IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C)
Apr 2008
IPR012347 (IPR012347 Ferritin-like)
Apr 2008
IPR011881 (IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A)
Apr 2008
IPR009078 (IPR009078 Ferritin-like superfamily)
Apr 2008
PF05138 (PF05138 Phenylacetic acid catabolic protein)
Jul 2018
Gene Ontology
top
Annotations
top
Type
Annotation
Evidence
Annotated
name
paaA
Experimental -
PubMed ID: 9748275
Reference: Escherichia coli
Aug 2002
synonym
ydbO
Published Annotation -
GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
synonym
JW1383
Published Annotation -
PubMed ID: 16397293
Jan 2006
synonym
ECK1385
Published Annotation -
PubMed ID: 16397293
Jan 2006
locus tag
b1388
Unique Identifier -
Origin: Guy Plunkett III, guy@genome.wisc.edu
May 2004
product
phenylacetyl-CoA 1,2-epoxidase monooxygenase subunit
Published Annotation -
EcoCyc Accession Number: G6709
Reference: Escherichia coli K-12 MG1655
Oct 2021
alternate product name
ring 1,2-phenylacetyl-CoA epoxidase subunit
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
alternate product name
predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Published Annotation -
PubMed ID: 16397293
Jan 2006
alternate product name
phenylacetic acid degradation protein
Experimental -
PubMed ID: 9748275
Reference: Escherichia coli
Jan 2006
alternate product name
putative phenylacetic acid degradation protein, possibly part of multicomponent oxygenase
Published Annotation -
Database Name: GenProtEC
Jan 2006
protein family
IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C
Protein Sequence Similarity -
InterPro Domain: IPR007814
Reference: Escherichia coli K-12 MG1655
Apr 2008
protein family
IPR012347 Ferritin-like
Protein Sequence Similarity -
InterPro Domain: IPR012347
Reference: Escherichia coli K-12 MG1655
Apr 2008
protein family
IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A
Protein Sequence Similarity -
InterPro Domain: IPR011881
Reference: Escherichia coli K-12 MG1655
Apr 2008
protein family
PF05138 Phenylacetic acid catabolic protein
Protein Sequence Similarity -
PFAM Model Name: PF05138
Reference: Escherichia coli K-12 MG1655
Jul 2018
protein family
IPR009078 Ferritin-like superfamily
Protein Sequence Similarity -
InterPro Domain: IPR009078
Reference: Escherichia coli K-12 MG1655
Apr 2008
EC number
1.14.13.149
Published Annotation -
Database Name: EC2GO: GO:0097266 Reference: Escherichia coli K-12 MG1655
Jul 2018
MultiFun
1.1.1
(metabolism; carbon utilization; carbon compounds )
Published Annotation -
MultiFun Database Name: MultiFun
Feb 2002
codon start
1
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
db xref
EcoGene:EG13736
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
db xref
GI:1787654
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
db xref
GeneID:945833
Published Annotation -
Entrez Gene Database ID: 945833
Reference: Escherichia coli K-12 MG1655
Jun 2009
db xref
UniProtKB:P76077
Published Annotation -
Swiss-Prot Accession Number: P76077
Jan 2005
db xref
ASAP:ABE-0004649
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
db xref
UniProtKB/Swiss-Prot:P76077
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
function
enzyme: Phenylacetic acid degradation
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
note
GO_process: GO:0016052 - carbohydrate catabolic process
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
protein id
AAC74470.1
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
subcellular localization
Cytoplasmic
Predicted by PSORTb -
PSORTb Final_Score: 8.96 Reference: Escherichia coli K-12 MG1655
Feb 2008
transl table
11
Published Annotation -
GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
GO biological process
GO:0010124 phenylacetate catabolic process
GO Inferred from Electronic Annotation -
Database Name:Identifier: InterPro2GO: IPR007814, IPR011881 Reference: Escherichia coli K-12 MG1655
Jul 2018
GO biological process
GO:0016052 carbohydrate catabolic process
Ontology Mapping -
Source and Dest Ontology: MultiFun to GO
Mar 2004
GO cellular component
GO:0005737 cytoplasm
GO Inferred from Electronic Annotation -
PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
GO molecular function
GO:0097266 phenylacetyl-CoA 1,2-epoxidase activity
GO Inferred from Electronic Annotation -
Database Name:Identifier: InterPro2GO: IPR011881 Reference: Escherichia coli K-12 MG1655
Jul 2018
GO molecular function
GO:0016491 oxidoreductase activity
GO Inferred from Electronic Annotation -
Database Name:Identifier: INTERPRO:IPR009078 Reference: Escherichia coli K-12 MG1655
Apr 2008
GO molecular function
GO:0046914 transition metal ion binding
GO Inferred from Electronic Annotation -
Database Name:Identifier: INTERPRO:IPR009078 Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative
top
Experimental
top
Strains
top
Strains with mutations in this feature.
Strain Name Strain Type Strain Information Strain Request FeatureID Name Mutation Details Experiments Using Strain Submitter FB22849 mutant Tn5 Insertion Request the Strain ABE-0004649 paaA ydbO::Tn5(KAN-I-SceI) at position 276 in Plus orientation ,+ pKD46
0 Blattner Laboratory
FB23090 mutant Tn5 Insertion Request the Strain ABE-0004649 paaA ydbO::Tn5KAN-I-SceI at position 276 in Plus orientation ,- pKD46 5 Tim Durfee (durf@genome.wisc.edu)
Context Table
top
Listed below are features that lie nearby this feature.
Features encoded in multiple intervals may
appear more than once in the table. Features that span the origin
will have a left endpoint greater than the right endpoint.
Features overlapping the region 1448927 to 1459856
FeatureID Name Feature Type Strand Left End Right End Relationship ABE-0000001 source forward 1 4641652 Contains
ABE-0004637 feaB CDS forward 1447519 1449018 Upstream
ABE-0004639 tynA CDS complement 1449076 1451349 Upstream
ABE-0285719 matS7 protein_bind forward 1451531 1451543 Upstream
ABE-0004644 paaZ CDS complement 1451597 1453642 Upstream
ABE-0004649 paaA CDS forward 1453927 1454856 Matches
ABE-0004651 paaB CDS forward 1454868 1455155 Downstream
ABE-0004653 paaC CDS forward 1455164 1455910 Downstream
ABE-0004655 paaD CDS forward 1455925 1456422 Downstream
ABE-0004657 paaE CDS forward 1456430 1457500 Downstream
ABE-0004659 paaF CDS forward 1457497 1458264 Downstream
ABE-0004661 paaG CDS forward 1458264 1459052 Downstream
ABE-0004663 paaH CDS forward 1459054 1460481 Downstream
Links download
top
Release Notes
top
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.