Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004649 (paaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004649 showshow history
Names
paaA JW1383 ECK1385 ydbO b1388
Product
phenylacetyl-CoA 1,2-epoxidase monooxygenase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1453927 1454856 930 310
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007814 (IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C) Apr 2008
Automated Process Approved IPR012347 (IPR012347 Ferritin-like) Apr 2008
Automated Process Approved IPR011881 (IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A) Apr 2008
Automated Process Approved IPR009078 (IPR009078 Ferritin-like superfamily) Apr 2008
Automated Process Approved PF05138 (PF05138 Phenylacetic acid catabolic protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0010124 phenylacetate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007814, IPR011881
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0097266 phenylacetyl-CoA 1,2-epoxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011881
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaA Experimental - PubMed ID: 9748275
Reference: Escherichia coli
Aug 2002
Person Approved synonym ydbO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW1383 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1385 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1388 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phenylacetyl-CoA 1,2-epoxidase monooxygenase subunit Published Annotation - EcoCyc Accession Number: G6709
Reference: Escherichia coli K-12 MG1655
Oct 2021
Automated Process Approved alternate product name ring 1,2-phenylacetyl-CoA epoxidase subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved alternate product name predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name phenylacetic acid degradation protein Experimental - PubMed ID: 9748275
Reference: Escherichia coli
Jan 2006
Person Uncurated alternate product name putative phenylacetic acid degradation protein, possibly part of multicomponent oxygenase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C Protein Sequence Similarity - InterPro Domain: IPR007814
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR012347 Ferritin-like Protein Sequence Similarity - InterPro Domain: IPR012347
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A Protein Sequence Similarity - InterPro Domain: IPR011881
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF05138 Phenylacetic acid catabolic protein Protein Sequence Similarity - PFAM Model Name: PF05138
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR009078 Ferritin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR009078
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Automated Process Uncurated EC number 1.14.13.149 Published Annotation - Database Name: EC2GO: GO:0097266
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13736 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1787654 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945833 Published Annotation - Entrez Gene Database ID: 945833
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P76077 Published Annotation - Swiss-Prot Accession Number: P76077 Jan 2005
Automated Process Approved db xref ASAP:ABE-0004649 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76077 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function enzyme: Phenylacetic acid degradation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74470.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0010124 phenylacetate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007814, IPR011881
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0097266 phenylacetyl-CoA 1,2-epoxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011881
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0046914 transition metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009078
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005280 paaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004672 paaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002556 paaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004219 paaA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002136 paaA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001807 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009973 paaA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008036 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005285 paaA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005169 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001504 paaA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001823 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005352 paaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006242 paaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006013 paaG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006153 paaG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001300 paaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001423 paaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001388 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001690 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001585 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001502 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001790 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001473 paaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000179 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002707 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004311 paaA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008260 paaA CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013080 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003969 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22849mutantTn5 InsertionRequest the StrainABE-0004649paaAydbO::Tn5(KAN-I-SceI) at position 276 in Plus orientation ,+ pKD46 0Blattner Laboratory
FB23090mutantTn5 InsertionRequest the StrainABE-0004649paaAydbO::Tn5KAN-I-SceI at position 276 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1448927 to 1459856
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004637feaBCDSforward14475191449018Upstream
ABE-0004639tynACDScomplement14490761451349Upstream
ABE-0285719matS7protein_bindforward14515311451543Upstream
ABE-0004644paaZCDScomplement14515971453642Upstream
ABE-0004649paaACDSforward14539271454856Matches
ABE-0004651paaBCDSforward14548681455155Downstream
ABE-0004653paaCCDSforward14551641455910Downstream
ABE-0004655paaDCDSforward14559251456422Downstream
ABE-0004657paaECDSforward14564301457500Downstream
ABE-0004659paaFCDSforward14574971458264Downstream
ABE-0004661paaGCDSforward14582641459052Downstream
ABE-0004663paaHCDSforward14590541460481Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.