Alignments
Protein Domains
ASAP ID
Names
paaC
JW1385
ECK1387
ydbP
b1390
Product
phenylacetyl-CoA 1,2-epoxidase structural subunit
Type
CDS
Location
#
Contig
Strand
Left
Right
Length (b.p.)
Length (a.a.)
1
Chromosome
forward
1455164
1455910
747
249
Sequence
Context
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Protein Families
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Family
Annotated
IPR007814 (IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C)
Apr 2008
IPR012347 (IPR012347 Ferritin-like)
Apr 2008
IPR011882 (IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C)
Apr 2008
IPR009078 (IPR009078 Ferritin-like superfamily)
Apr 2008
PF05138 (PF05138 Phenylacetic acid catabolic protein)
Jul 2018
Gene Ontology
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Type
Annotation
Evidence
Annotated
GO biological process
GO:0010124 phenylacetate catabolic process
GO Inferred from Electronic Annotation -
Database Name:Identifier: InterPro2GO: IPR007814, IPR011882 Reference: Escherichia coli K-12 MG1655
Jul 2018
GO biological process
GO:0016052 carbohydrate catabolic process
Ontology Mapping -
Source and Dest Ontology: MultiFun to GO
Mar 2004
GO cellular component
GO:0005737 cytoplasm
GO Inferred from Electronic Annotation -
PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
GO molecular function
GO:0046914 transition metal ion binding
GO Inferred from Electronic Annotation -
Database Name:Identifier: INTERPRO:IPR009078 Reference: Escherichia coli K-12 MG1655
Apr 2008
GO molecular function
GO:0016491 oxidoreductase activity
GO Inferred from Electronic Annotation -
Database Name:Identifier: INTERPRO:IPR009078 Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations
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Comparative
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Experimental
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Strains
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Strains with mutations in this feature.
Strain Name Strain Type Strain Information Strain Request FeatureID Name Mutation Details Experiments Using Strain Submitter FB22850 mutant Tn5 Insertion Request the Strain ABE-0004653 paaC ydbP::Tn5(KAN-I-SceI) at position 327 in Minus orientation ,+ pKD46
0 Blattner Laboratory
FB23091 mutant Tn5 Insertion Request the Strain ABE-0004653 paaC ydbP::Tn5KAN-I-SceI at position 327 in Minus orientation ,- pKD46 5 Tim Durfee (durf@genome.wisc.edu)
Context Table
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Listed below are features that lie nearby this feature.
Features encoded in multiple intervals may
appear more than once in the table. Features that span the origin
will have a left endpoint greater than the right endpoint.
Features overlapping the region 1450164 to 1460910
FeatureID Name Feature Type Strand Left End Right End Relationship ABE-0000001 source forward 1 4641652 Contains
ABE-0004639 tynA CDS complement 1449076 1451349 Upstream
ABE-0285719 matS7 protein_bind forward 1451531 1451543 Upstream
ABE-0004644 paaZ CDS complement 1451597 1453642 Upstream
ABE-0004649 paaA CDS forward 1453927 1454856 Upstream
ABE-0004651 paaB CDS forward 1454868 1455155 Upstream
ABE-0004653 paaC CDS forward 1455164 1455910 Matches
ABE-0004655 paaD CDS forward 1455925 1456422 Downstream
ABE-0004657 paaE CDS forward 1456430 1457500 Downstream
ABE-0004659 paaF CDS forward 1457497 1458264 Downstream
ABE-0004661 paaG CDS forward 1458264 1459052 Downstream
ABE-0004663 paaH CDS forward 1459054 1460481 Downstream
ABE-0285720 matS8 protein_bind forward 1459985 1459997 Downstream
ABE-0004666 paaI CDS forward 1460471 1460893 Downstream
ABE-0004668 paaJ CDS forward 1460893 1462098 Downstream
Links download
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Release Notes
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All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.