Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004657 (paaE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004657 showshow history
Names
paaE ydbR JW1387 ECK1389 b1392
Product
phenylacetyl-CoA 1,2-epoxidase reductase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1456430 1457500 1071 357
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001041 (IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain) Apr 2008
Automated Process Approved IPR001433 (IPR001433 Oxidoreductase FAD/NAD(P)-binding) Apr 2008
Automated Process Approved IPR008333 (IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain) Apr 2008
Automated Process Approved IPR014439 (IPR014439 (DEPRECATED) Phthalate dioxygenase reductase) Apr 2008
Automated Process Approved IPR006058 (IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site) Apr 2008
Automated Process Approved IPR001709 (IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase) Apr 2008
Automated Process Approved IPR012675 (IPR012675 Beta-grasp domain superfamily) Apr 2008
Automated Process Approved IPR001221 (IPR001221 (DEPRECATED) Phenol hydroxylase reductase) Apr 2008
Automated Process Approved IPR011884 (IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit) Apr 2008
Automated Process Approved IPR017938 (IPR017938 Riboflavin synthase-like beta-barrel) Jul 2018
Automated Process Approved IPR039261 (IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain) Jul 2018
Automated Process Approved IPR036010 (IPR036010 2Fe-2S ferredoxin-like superfamily) Jul 2018
Automated Process Approved PF00175 (PF00175 Oxidoreductase NAD-binding domain) Jul 2018
Automated Process Approved PF00970 (PF00970 Oxidoreductase FAD-binding domain) Jul 2018
Automated Process Approved PF00111 (PF00111 2Fe-2S iron-sulfur cluster binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0010124 phenylacetate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011884
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaE Experimental - PubMed ID: 9748275
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK1389 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ydbR Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1387 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1392 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phenylacetyl-CoA 1,2-epoxidase reductase subunit Published Annotation - EcoCyc Accession Number: G6713
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name putative phenylacetic acid degradation protein, putative NAD/FAD oxidoreductase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name ring 1,2-phenylacetyl-CoA epoxidase, NAD(P)H oxidoreductase component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name probable phenylacetic acid degradation NADH oxidoreductase Experimental - PubMed ID: 9748275
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family PF00111 2Fe-2S iron-sulfur cluster binding domain Protein Sequence Similarity - PFAM Model Name: PF00111
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00970 Oxidoreductase FAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00970
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001221 (DEPRECATED) Phenol hydroxylase reductase Protein Sequence Similarity - InterPro Domain: IPR001221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012675 Beta-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR012675
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Protein Sequence Similarity - InterPro Domain: IPR006058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase Protein Sequence Similarity - InterPro Domain: IPR001709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit Protein Sequence Similarity - InterPro Domain: IPR011884
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00175 Oxidoreductase NAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00175
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036010 2Fe-2S ferredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036010
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR039261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014439 (DEPRECATED) Phthalate dioxygenase reductase Protein Sequence Similarity - InterPro Domain: IPR014439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001433 Oxidoreductase FAD/NAD(P)-binding Protein Sequence Similarity - InterPro Domain: IPR001433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017938 Riboflavin synthase-like beta-barrel Protein Sequence Similarity - InterPro Domain: IPR017938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Protein Sequence Similarity - InterPro Domain: IPR001041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.-.-.- Published Annotation - Swiss-Prot Accession Number: P76081 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76081 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945962 Published Annotation - Entrez Gene Database ID: 945962
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76081 Published Annotation - Swiss-Prot Accession Number: P76081 Jan 2006
Automated Process Approved db xref GI:1787658 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004657 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13739 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Phenylacetic acid degradation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74474.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0010124 phenylacetate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011884
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001041
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005270 paaE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004663 paaE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002589 paaE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004208 paaE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002132 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001811 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002563 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009977 paaE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008032 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005289 paaE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005165 PaaE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001508 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001827 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005348 paaE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006246 paaE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006017 paaK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006157 paaK CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001304 paaE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001427 paaE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001384 paaK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001694 paaK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001581 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001506 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001477 paaE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000175 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002703 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004305 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008265 paaE CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013090 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003965 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1451430 to 1462500
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285719matS7protein_bindforward14515311451543Upstream
ABE-0004644paaZCDScomplement14515971453642Upstream
ABE-0004649paaACDSforward14539271454856Upstream
ABE-0004651paaBCDSforward14548681455155Upstream
ABE-0004653paaCCDSforward14551641455910Upstream
ABE-0004655paaDCDSforward14559251456422Upstream
ABE-0004657paaECDSforward14564301457500Matches
ABE-0004659paaFCDSforward14574971458264Overlaps Downstream
ABE-0004661paaGCDSforward14582641459052Downstream
ABE-0004663paaHCDSforward14590541460481Downstream
ABE-0285720matS8protein_bindforward14599851459997Downstream
ABE-0004666paaICDSforward14604711460893Downstream
ABE-0004668paaJCDSforward14608931462098Downstream
ABE-0004671paaKCDSforward14621251463438Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.