Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004661 (paaG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004661 showshow history
Names
paaG ydbT JW1389 ECK1391 b1394
Product
acyl-CoA hydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1458264 1459052 789 263
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011968 (IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB) Apr 2008
Automated Process Approved IPR001753 (IPR001753 Enoyl-CoA hydratase/isomerase) Apr 2008
Automated Process Approved IPR029045 (IPR029045 ClpP/crotonase-like domain superfamily) Jul 2018
Automated Process Approved PF00378 (PF00378 Enoyl-CoA hydratase/isomerase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0010124 phenylacetate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaG Experimental - PubMed ID: 9748275
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK1391 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1389 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ydbT Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1394 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acyl-CoA hydratase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name 1,2-epoxyphenylacetyl-CoA isomerase, oxepin-CoA-forming Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name probable enoyl-CoA hydratase Experimental - PubMed ID: 9748275
Reference: Escherichia coli 		Jan 2006
Person Uncurated alternate product name putative acyl-CoA hydratase in phenyl acid degradation Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB Protein Sequence Similarity - InterPro Domain: IPR011968
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001753 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - InterPro Domain: IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029045 ClpP/crotonase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029045
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00378 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - PFAM Model Name: PF00378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.1.17 Published Annotation - Swiss-Prot Accession Number: P77467 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13741 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787660 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946263 Published Annotation - Entrez Gene Database ID: 946263
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77467 Published Annotation - Swiss-Prot Accession Number: P77467 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77467 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004661 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Phenylacetic acid degradation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74476.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0010124 phenylacetate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005104 paaG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004628 paaG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002777 paaG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004191 paaG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002130 paaG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001813 paaB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002565 paaB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009979 paaG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008030 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005292 paaG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005163 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001510 paaB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001829 paaB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005346 paaG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006248 paaG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006019 paaB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006159 paaB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001306 paaG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001429 paaG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001382 paaB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001696 paaB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001579 paaB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001508 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001784 paaG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001479 paaG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000173 paaG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002701 paaG CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267551 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007080 paaG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008267 paaG CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013109 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003963 paaG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1453264 to 1464052
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004644paaZCDScomplement14515971453642Upstream
ABE-0004649paaACDSforward14539271454856Upstream
ABE-0004651paaBCDSforward14548681455155Upstream
ABE-0004653paaCCDSforward14551641455910Upstream
ABE-0004655paaDCDSforward14559251456422Upstream
ABE-0004657paaECDSforward14564301457500Upstream
ABE-0004659paaFCDSforward14574971458264Overlaps Upstream
ABE-0004661paaGCDSforward14582641459052Matches
ABE-0004663paaHCDSforward14590541460481Downstream
ABE-0285720matS8protein_bindforward14599851459997Downstream
ABE-0004666paaICDSforward14604711460893Downstream
ABE-0004668paaJCDSforward14608931462098Downstream
ABE-0004671paaKCDSforward14621251463438Downstream
ABE-0004674paaXCDSforward14635391464489Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.