Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004668 (paaJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004668 showshow history
Names
paaJ ydbW JW1392 ECK1394 b1397
Product
beta-ketoadipyl-CoA thiolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1460893 1462098 1206 402
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012793 (IPR012793 Beta-ketoadipyl CoA thiolase) Apr 2008
Automated Process Approved IPR002155 (IPR002155 Thiolase) Apr 2008
Automated Process Approved IPR020617 (IPR020617 Thiolase, C-terminal) Jul 2018
Automated Process Approved IPR020616 (IPR020616 Thiolase, N-terminal) Jul 2018
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2018
Automated Process Approved PF02803 (PF02803 Thiolase, C-terminal domain) Jul 2018
Automated Process Approved PF00108 (PF00108 Thiolase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020617, IPR020616, IPR002155, IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0019619 3,4-dihydroxybenzoate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaJ Experimental - PubMed ID: 9748275
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK1394 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ydbW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1392 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1397 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product beta-ketoadipyl-CoA thiolase Published Annotation - EcoCyc Accession Number: G6718
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted beta-ketoadipyl CoA thiolase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative beta-ketoadipyl CoA thiolase, putative phenylacetic acid degradation protein Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name probable beta-ketoadipyl CoA thiolase Experimental - PubMed ID: 9748275
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR012793 Beta-ketoadipyl CoA thiolase Protein Sequence Similarity - InterPro Domain: IPR012793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020616 Thiolase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR020616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02803 Thiolase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02803
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00108 Thiolase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00108
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020617 Thiolase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR020617
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002155 Thiolase Protein Sequence Similarity - InterPro Domain: IPR002155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.- Published Annotation - Swiss-Prot Accession Number: P77525 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004668 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787663 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77525 Published Annotation - Swiss-Prot Accession Number: P77525 Jan 2006
Automated Process Approved db xref EcoGene:EG13744 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946121 Published Annotation - Entrez Gene Database ID: 946121
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0C7L2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme: Phenylacetic acid degradation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74479.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019619 3,4-dihydroxybenzoate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020617, IPR020616, IPR002155, IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004654 paaJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003871 paaJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000065 paaJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004058 paaJ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002127 paaJ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001816 pcaF CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002568 pcaF CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009982 paaJ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008027 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005295 paaJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005160 PaaJ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001513 pcaF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001832 pcaF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005343 paaJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006251 paaJ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006022 pcaF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006162 pcaF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001309 paaJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001432 paaJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001379 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001699 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001576 pcaF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001511 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001781 paaJ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001482 paaJ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000170 paaJ CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002648 catF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001372 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003444 catF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000755 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137097 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004381 catF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002698 paaJ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008270 paaJ CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013125 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003960 paaJ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1455893 to 1467098
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004653paaCCDSforward14551641455910Upstream
ABE-0004655paaDCDSforward14559251456422Upstream
ABE-0004657paaECDSforward14564301457500Upstream
ABE-0004659paaFCDSforward14574971458264Upstream
ABE-0004661paaGCDSforward14582641459052Upstream
ABE-0004663paaHCDSforward14590541460481Upstream
ABE-0285720matS8protein_bindforward14599851459997Upstream
ABE-0004666paaICDSforward14604711460893Overlaps Upstream
ABE-0004668paaJCDSforward14608931462098Matches
ABE-0004671paaKCDSforward14621251463438Downstream
ABE-0004674paaXCDSforward14635391464489Downstream
ABE-0004676paaYCDSforward14644711465061Downstream
ABE-0285217ynbGCDScomplement14651651465230Downstream
ABE-0004680ydbA_1CDSpforward14653921467950Downstream
ABE-0285093ydbApseudogeneforward14653921467909(Interval #1) Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.