Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004676 (paaY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004676 showshow history
Names
paaY ydbZ JW1395 ECK1397 b1400
Product
2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1464471 1465061 591 197
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001451 (IPR001451 Hexapeptide repeat) Apr 2008
Automated Process Approved IPR011004 (IPR011004 Trimeric LpxA-like superfamily) Apr 2008
Automated Process Approved IPR011974 (IPR011974 Phenylacetic acid degradation protein PaaY) Apr 2008
Automated Process Approved PF00132 (PF00132 Bacterial transferase hexapeptide (six repeats)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaY Experimental - PubMed ID: 9748275
Reference: Escherichia coli 		Aug 2002
Person Approved synonym JW1395 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ydbZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1397 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1400 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase Published Annotation - EcoCyc Accession Number: G6721
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted hexapeptide repeat acetyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative acyl transferase, iron-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name phenylacetic acid degradation protein; putative transferase Published Annotation - Swiss-Prot Accession Number: P77181 Jan 2006
Protein Family
Automated Process Approved protein family IPR001451 Hexapeptide repeat Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00132 Bacterial transferase hexapeptide (six repeats) Protein Sequence Similarity - PFAM Model Name: PF00132
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011004 Trimeric LpxA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011004
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011974 Phenylacetic acid degradation protein PaaY Protein Sequence Similarity - InterPro Domain: IPR011974
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 2.3.1.- Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13747 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77181 Published Annotation - Swiss-Prot Accession Number: P77181 Jan 2006
Automated Process Approved db xref GI:1787667 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77181 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945965 Published Annotation - Entrez Gene Database ID: 945965
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0004676 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC74482.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002442 paaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002628 paaY CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002619 paaY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004078 paaY CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002122 paaY CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002092 paaY CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002571 paaY CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009985 paaY CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008024 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005298 paaY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005157 PaaY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001516 paaY CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001835 paaY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005340 paaY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006254 paaY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006026 paaY CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006165 paaY CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001312 paaY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001435 paaY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001376 paaY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001702 paaY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001573 paaY CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001514 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001778 paaY CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001485 paaY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000167 paaY CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002695 paaY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007071 paaY CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013137 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003957 paaY CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1459471 to 1470061
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004663paaHCDSforward14590541460481Upstream
ABE-0285720matS8protein_bindforward14599851459997Upstream
ABE-0004666paaICDSforward14604711460893Upstream
ABE-0004668paaJCDSforward14608931462098Upstream
ABE-0004671paaKCDSforward14621251463438Upstream
ABE-0004674paaXCDSforward14635391464489Overlaps Upstream
ABE-0004676paaYCDSforward14644711465061Matches
ABE-0285217ynbGCDScomplement14651651465230Downstream
ABE-0004680ydbA_1CDSpforward14653921467950Downstream
ABE-0285093ydbApseudogeneforward14653921467909(Interval #1) Downstream
ABE-0004681is_elementforward14679101469240Downstream
ABE-0285448mobile_elementcomplement14679101469240Downstream
ABE-0004683insD-2CDScomplement14679211468826Downstream
ABE-0004685insC-2CDScomplement14687841469149Downstream
ABE-0285093ydbApseudogeneforward14692461469295(Interval #2) Downstream
ABE-0004689mobile_elementforward14692961470516Downstream
ABE-0004691insI-2CDSforward14693581470509Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.